Variant report

Variant	rs61869974
Chromosome Location	chr10:97283325-97283326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97280950..97286355-chr10:97287261..97290251,5	K562	blood:
2	chr10:97282540..97285200-chr10:97291326..97293754,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10882614	0.85[EUR][1000 genomes]
rs10882615	0.85[EUR][1000 genomes]
rs10882616	0.85[EUR][1000 genomes]
rs10882617	0.85[EUR][1000 genomes]
rs10882618	0.85[EUR][1000 genomes]
rs11188355	0.84[EUR][1000 genomes]
rs11188357	0.85[EUR][1000 genomes]
rs11188359	0.85[EUR][1000 genomes]
rs12219483	0.85[EUR][1000 genomes]
rs12411861	0.86[EUR][1000 genomes]
rs17458865	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17536344	0.91[AFR][1000 genomes]
rs17537576	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55873943	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55941659	0.81[AFR][1000 genomes]
rs56353860	0.85[EUR][1000 genomes]
rs61869973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869975	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61869976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61870046	0.85[EUR][1000 genomes]
rs61870048	0.84[EUR][1000 genomes]
rs61870049	0.85[EUR][1000 genomes]
rs61870050	0.84[EUR][1000 genomes]
rs61870051	0.85[EUR][1000 genomes]
rs61870052	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:97273600-97284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:97276600-97283400	Enhancers	Fetal Brain Male	brain
5	chr10:97277000-97284200	Enhancers	Fetal Brain Female	brain
6	chr10:97278000-97284000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
8	chr10:97279000-97284000	Weak transcription	Psoas Muscle	Psoas
9	chr10:97279000-97284000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:97279200-97285800	Weak transcription	Pancreas	Pancrea
11	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
14	chr10:97279400-97283800	Weak transcription	K562	blood
15	chr10:97279400-97285800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:97279600-97284000	Weak transcription	Liver	Liver
17	chr10:97279600-97284800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:97279800-97284600	Weak transcription	Brain Substantia Nigra	brain
19	chr10:97279800-97288200	Weak transcription	HepG2	liver
20	chr10:97279800-97290600	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:97280000-97284200	Weak transcription	Fetal Stomach	stomach
22	chr10:97280400-97289000	Enhancers	Rectal Smooth Muscle	rectum
23	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
24	chr10:97280800-97285000	Enhancers	Right Atrium	heart
25	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
26	chr10:97281000-97285600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:97281200-97284600	Weak transcription	Right Ventricle	heart
28	chr10:97281600-97284200	Weak transcription	Lung	lung
29	chr10:97281600-97285800	Weak transcription	Gastric	stomach
30	chr10:97281600-97289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:97281800-97283600	Enhancers	Brain Hippocampus Middle	brain
33	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:97282000-97283600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:97282200-97283800	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr10:97282200-97285200	Enhancers	Brain Angular Gyrus	brain
37	chr10:97282200-97285400	Enhancers	Brain Cingulate Gyrus	brain
38	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
39	chr10:97282400-97283800	Enhancers	Brain Anterior Caudate	brain
40	chr10:97282400-97288800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:97282600-97283600	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr10:97282600-97284400	Enhancers	Stomach Smooth Muscle	stomach
45	chr10:97282600-97286600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:97282800-97283400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:97282800-97285800	Weak transcription	Aorta	Aorta
48	chr10:97282800-97287400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:97282800-97288800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links