Variant report

Variant	rs17537576
Chromosome Location	chr10:97300062-97300063
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97299536..97302399-chr10:97304637..97306757,4	K562	blood:
2	chr10:97299249..97301273-chr10:97310241..97312398,2	K562	blood:
3	chr10:97284547..97287564-chr10:97299273..97302569,3	K562	blood:
4	chr10:97293527..97296505-chr10:97299046..97301710,3	K562	blood:
5	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10786218	0.81[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs10882614	0.98[EUR][1000 genomes]
rs10882615	1.00[CEU][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs10882616	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs10882617	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10882618	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11188355	0.97[EUR][1000 genomes]
rs11188357	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11188359	0.98[EUR][1000 genomes]
rs12219483	1.00[CEU][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs12411861	1.00[CEU][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs12416299	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs17458865	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17536344	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs55873943	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56353860	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61869973	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61869974	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61869975	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61869976	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61870046	0.98[EUR][1000 genomes]
rs61870048	0.97[EUR][1000 genomes]
rs61870049	0.98[EUR][1000 genomes]
rs61870050	0.96[EUR][1000 genomes]
rs61870051	0.98[EUR][1000 genomes]
rs61870052	0.98[EUR][1000 genomes]
rs7085647	0.81[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
2	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
4	chr10:97289400-97303800	Weak transcription	HSMM	muscle
5	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
6	chr10:97290600-97301800	Weak transcription	Ovary	ovary
7	chr10:97291200-97301000	Weak transcription	Fetal Brain Female	brain
8	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
9	chr10:97292600-97300600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:97293000-97300400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:97293400-97305400	Enhancers	Right Atrium	heart
13	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
14	chr10:97293600-97302000	Weak transcription	Adipose Nuclei	Adipose
15	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
16	chr10:97296200-97301400	Weak transcription	Colonic Mucosa	Colon
17	chr10:97296200-97306400	Enhancers	Liver	Liver
18	chr10:97296400-97302400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:97296600-97302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
22	chr10:97297000-97302600	Weak transcription	HSMMtube	muscle
23	chr10:97297200-97300400	Weak transcription	Spleen	Spleen
24	chr10:97297200-97301400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:97297200-97302800	Weak transcription	Fetal Brain Male	brain
26	chr10:97297600-97300200	Genic enhancers	Aorta	Aorta
27	chr10:97298200-97301400	Weak transcription	Esophagus	oesophagus
28	chr10:97298200-97302000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:97298200-97305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:97298200-97308200	Enhancers	Fetal Muscle Leg	muscle
31	chr10:97298400-97300600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:97298400-97300600	Weak transcription	Gastric	stomach
33	chr10:97298400-97300600	Weak transcription	Lung	lung
34	chr10:97298400-97300800	Enhancers	Fetal Intestine Small	intestine
35	chr10:97298400-97305200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr10:97298600-97300400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr10:97298600-97305000	Enhancers	Brain Anterior Caudate	brain
38	chr10:97298800-97300800	Enhancers	Duodenum Mucosa	Duodenum
39	chr10:97298800-97301400	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr10:97298800-97305800	Enhancers	Brain Hippocampus Middle	brain
41	chr10:97299000-97303800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:97299000-97307200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97299200-97300200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
44	chr10:97299200-97300600	Weak transcription	Fetal Stomach	stomach
45	chr10:97299200-97300800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr10:97299200-97301000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr10:97299200-97301400	Weak transcription	Fetal Lung	lung
48	chr10:97299200-97303000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr10:97299200-97303600	Enhancers	Brain Substantia Nigra	brain
50	chr10:97299200-97303600	Enhancers	K562	blood

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