Variant report

Variant	rs10786218
Chromosome Location	chr10:97302524-97302525
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97301380..97303820-chr10:97311084..97312595,2	MCF-7	breast:
2	chr10:97284547..97287564-chr10:97299273..97302569,3	K562	blood:
3	chr10:97292035..97293722-chr10:97302086..97303727,2	K562	blood:
4	chr10:97302505..97305579-chr10:97311139..97314608,3	K562	blood:
5	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10882614	0.85[EUR][1000 genomes]
rs10882615	0.82[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs10882616	0.85[EUR][1000 genomes]
rs10882617	0.85[EUR][1000 genomes]
rs10882618	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11188353	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188355	0.84[EUR][1000 genomes]
rs11188357	0.85[EUR][1000 genomes]
rs11188359	0.85[EUR][1000 genomes]
rs12219483	0.82[CEU][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs12411861	0.82[CEU][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs12414046	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1536444	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs17458865	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs17537576	0.81[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs55873943	0.81[EUR][1000 genomes]
rs56353860	0.85[EUR][1000 genomes]
rs61870046	0.85[EUR][1000 genomes]
rs61870048	0.84[EUR][1000 genomes]
rs61870049	0.85[EUR][1000 genomes]
rs61870050	0.83[EUR][1000 genomes]
rs61870051	0.85[EUR][1000 genomes]
rs61870052	0.85[EUR][1000 genomes]
rs7085647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10786218	CPEB3	cis	cerebellum	SCAN
rs10786218	CYP26A1	cis	cerebellum	SCAN
rs10786218	CYP2C8	cis	parietal	SCAN
rs10786218	C10orf62	cis	parietal	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
3	chr10:97289400-97303800	Weak transcription	HSMM	muscle
4	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
5	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:97293400-97305400	Enhancers	Right Atrium	heart
7	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
8	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
9	chr10:97296200-97306400	Enhancers	Liver	Liver
10	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:97296600-97302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
13	chr10:97297000-97302600	Weak transcription	HSMMtube	muscle
14	chr10:97297200-97302800	Weak transcription	Fetal Brain Male	brain
15	chr10:97298200-97305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:97298200-97308200	Enhancers	Fetal Muscle Leg	muscle
17	chr10:97298400-97305200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr10:97298600-97305000	Enhancers	Brain Anterior Caudate	brain
19	chr10:97298800-97305800	Enhancers	Brain Hippocampus Middle	brain
20	chr10:97299000-97303800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:97299000-97307200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:97299200-97303000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr10:97299200-97303600	Enhancers	Brain Substantia Nigra	brain
24	chr10:97299200-97303600	Enhancers	K562	blood
25	chr10:97299400-97304200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:97299400-97305200	Enhancers	Right Ventricle	heart
27	chr10:97299800-97302800	Enhancers	Small Intestine	intestine
28	chr10:97300200-97303400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:97300400-97305000	Enhancers	Spleen	Spleen
30	chr10:97300400-97308800	Enhancers	Psoas Muscle	Psoas
31	chr10:97300600-97302800	Enhancers	Fetal Stomach	stomach
32	chr10:97300600-97304200	Enhancers	Gastric	stomach
33	chr10:97300600-97305200	Enhancers	Lung	lung
34	chr10:97300800-97303000	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr10:97300800-97303800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:97300800-97305200	Enhancers	Pancreas	Pancrea
37	chr10:97300800-97307200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:97301000-97303200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:97301000-97303600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:97301000-97303800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:97301000-97303800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:97301000-97315200	Enhancers	HepG2	liver
43	chr10:97301200-97302800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:97301200-97303000	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr10:97301400-97302600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:97301400-97302600	Enhancers	Fetal Lung	lung
47	chr10:97301400-97302800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr10:97301400-97303000	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr10:97301400-97304400	Flanking Active TSS	Fetal Heart	heart
50	chr10:97301400-97305800	Enhancers	Brain Angular Gyrus	brain

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