Variant report

Variant	rs12414046
Chromosome Location	chr10:97301410-97301411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97299536..97302399-chr10:97304637..97306757,4	K562	blood:
2	chr10:97301380..97303820-chr10:97311084..97312595,2	MCF-7	breast:
3	chr10:97284547..97287564-chr10:97299273..97302569,3	K562	blood:
4	chr10:97293527..97296505-chr10:97299046..97301710,3	K562	blood:
5	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10786218	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188353	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416299	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536444	0.82[ASN][1000 genomes]
rs7085647	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
3	chr10:97289400-97303800	Weak transcription	HSMM	muscle
4	chr10:97290600-97301800	Weak transcription	Ovary	ovary
5	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
6	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:97293400-97305400	Enhancers	Right Atrium	heart
8	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
9	chr10:97293600-97302000	Weak transcription	Adipose Nuclei	Adipose
10	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
11	chr10:97296200-97306400	Enhancers	Liver	Liver
12	chr10:97296400-97302400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:97296600-97302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
16	chr10:97297000-97302600	Weak transcription	HSMMtube	muscle
17	chr10:97297200-97302800	Weak transcription	Fetal Brain Male	brain
18	chr10:97298200-97302000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:97298200-97305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:97298200-97308200	Enhancers	Fetal Muscle Leg	muscle
21	chr10:97298400-97305200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:97298600-97305000	Enhancers	Brain Anterior Caudate	brain
23	chr10:97298800-97305800	Enhancers	Brain Hippocampus Middle	brain
24	chr10:97299000-97303800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:97299000-97307200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:97299200-97303000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:97299200-97303600	Enhancers	Brain Substantia Nigra	brain
28	chr10:97299200-97303600	Enhancers	K562	blood
29	chr10:97299400-97301600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:97299400-97304200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:97299400-97305200	Enhancers	Right Ventricle	heart
32	chr10:97299800-97302200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:97299800-97302800	Enhancers	Small Intestine	intestine
34	chr10:97300200-97303400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:97300400-97301800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:97300400-97301800	Genic enhancers	Aorta	Aorta
37	chr10:97300400-97301800	Enhancers	Fetal Muscle Trunk	muscle
38	chr10:97300400-97305000	Enhancers	Spleen	Spleen
39	chr10:97300400-97308800	Enhancers	Psoas Muscle	Psoas
40	chr10:97300600-97301800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:97300600-97302800	Enhancers	Fetal Stomach	stomach
42	chr10:97300600-97304200	Enhancers	Gastric	stomach
43	chr10:97300600-97305200	Enhancers	Lung	lung
44	chr10:97300800-97301800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:97300800-97302200	Genic enhancers	Fetal Intestine Small	intestine
46	chr10:97300800-97303000	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr10:97300800-97303800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr10:97300800-97305200	Enhancers	Pancreas	Pancrea
49	chr10:97300800-97307200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr10:97301000-97303200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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