Variant report

Variant	rs7085647
Chromosome Location	chr10:97300636-97300637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97299536..97302399-chr10:97304637..97306757,4	K562	blood:
2	chr10:97299249..97301273-chr10:97310241..97312398,2	K562	blood:
3	chr10:97284547..97287564-chr10:97299273..97302569,3	K562	blood:
4	chr10:97293527..97296505-chr10:97299046..97301710,3	K562	blood:
5	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10786218	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882614	0.85[EUR][1000 genomes]
rs10882615	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs10882616	0.85[EUR][1000 genomes]
rs10882617	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs10882618	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs11188353	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188355	0.84[EUR][1000 genomes]
rs11188357	0.85[EUR][1000 genomes]
rs11188359	0.85[EUR][1000 genomes]
rs12219483	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs12411861	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs12414046	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536444	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17458865	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs17537576	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs55873943	0.81[EUR][1000 genomes]
rs56353860	0.85[EUR][1000 genomes]
rs61870046	0.85[EUR][1000 genomes]
rs61870048	0.84[EUR][1000 genomes]
rs61870049	0.85[EUR][1000 genomes]
rs61870050	0.83[EUR][1000 genomes]
rs61870051	0.85[EUR][1000 genomes]
rs61870052	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
2	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
4	chr10:97289400-97303800	Weak transcription	HSMM	muscle
5	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
6	chr10:97290600-97301800	Weak transcription	Ovary	ovary
7	chr10:97291200-97301000	Weak transcription	Fetal Brain Female	brain
8	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
9	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:97293400-97305400	Enhancers	Right Atrium	heart
11	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
12	chr10:97293600-97302000	Weak transcription	Adipose Nuclei	Adipose
13	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
14	chr10:97296200-97301400	Weak transcription	Colonic Mucosa	Colon
15	chr10:97296200-97306400	Enhancers	Liver	Liver
16	chr10:97296400-97302400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:97296600-97302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
20	chr10:97297000-97302600	Weak transcription	HSMMtube	muscle
21	chr10:97297200-97301400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr10:97297200-97302800	Weak transcription	Fetal Brain Male	brain
23	chr10:97298200-97301400	Weak transcription	Esophagus	oesophagus
24	chr10:97298200-97302000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:97298200-97305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:97298200-97308200	Enhancers	Fetal Muscle Leg	muscle
27	chr10:97298400-97300800	Enhancers	Fetal Intestine Small	intestine
28	chr10:97298400-97305200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr10:97298600-97305000	Enhancers	Brain Anterior Caudate	brain
30	chr10:97298800-97300800	Enhancers	Duodenum Mucosa	Duodenum
31	chr10:97298800-97301400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:97298800-97305800	Enhancers	Brain Hippocampus Middle	brain
33	chr10:97299000-97303800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:97299000-97307200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:97299200-97300800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr10:97299200-97301000	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr10:97299200-97301400	Weak transcription	Fetal Lung	lung
38	chr10:97299200-97303000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr10:97299200-97303600	Enhancers	Brain Substantia Nigra	brain
40	chr10:97299200-97303600	Enhancers	K562	blood
41	chr10:97299400-97301600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:97299400-97304200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:97299400-97305200	Enhancers	Right Ventricle	heart
44	chr10:97299600-97300800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr10:97299600-97300800	Enhancers	H1 Cell Line	embryonic stem cell
46	chr10:97299600-97301000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr10:97299600-97301400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:97299800-97300800	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr10:97299800-97301200	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr10:97299800-97301200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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