Variant report

Variant	rs11188355
Chromosome Location	chr10:97305354-97305355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:
2	chr10:97302505..97305579-chr10:97311139..97314608,3	K562	blood:
3	chr10:97299536..97302399-chr10:97304637..97306757,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10786218	0.84[EUR][1000 genomes]
rs10786221	0.87[ASN][1000 genomes]
rs10882614	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882615	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882616	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882617	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882618	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188357	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188359	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12219483	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12411861	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12416299	0.84[EUR][1000 genomes]
rs1536445	0.86[ASN][1000 genomes]
rs17458865	0.93[EUR][1000 genomes]
rs17537576	0.97[EUR][1000 genomes]
rs55873943	0.93[EUR][1000 genomes]
rs56353860	0.99[EUR][1000 genomes]
rs61869973	0.84[EUR][1000 genomes]
rs61869974	0.84[EUR][1000 genomes]
rs61869975	0.83[EUR][1000 genomes]
rs61869976	0.85[EUR][1000 genomes]
rs61870045	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61870046	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61870048	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61870049	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61870050	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61870051	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61870052	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7069574	0.87[ASN][1000 genomes]
rs7085647	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
2	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
3	chr10:97293400-97305400	Enhancers	Right Atrium	heart
4	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
5	chr10:97296200-97306400	Enhancers	Liver	Liver
6	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
8	chr10:97298200-97308200	Enhancers	Fetal Muscle Leg	muscle
9	chr10:97298800-97305800	Enhancers	Brain Hippocampus Middle	brain
10	chr10:97299000-97307200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:97300400-97308800	Enhancers	Psoas Muscle	Psoas
12	chr10:97300800-97307200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:97301000-97315200	Enhancers	HepG2	liver
14	chr10:97301400-97305800	Enhancers	Brain Angular Gyrus	brain
15	chr10:97301400-97306600	Enhancers	Brain Cingulate Gyrus	brain
16	chr10:97301800-97311000	Weak transcription	Colonic Mucosa	Colon
17	chr10:97303000-97306800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:97303000-97309600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97303200-97306800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:97303400-97305400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr10:97303400-97305600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:97303600-97307000	Weak transcription	Brain Substantia Nigra	brain
23	chr10:97303800-97305800	Enhancers	K562	blood
24	chr10:97304000-97306000	Enhancers	Fetal Brain Female	brain
25	chr10:97304200-97306200	Weak transcription	Gastric	stomach
26	chr10:97304200-97306400	Genic enhancers	Fetal Stomach	stomach
27	chr10:97304200-97307600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:97304200-97309600	Weak transcription	Fetal Lung	lung
29	chr10:97304200-97310000	Weak transcription	Ovary	ovary
30	chr10:97304200-97310800	Enhancers	Rectal Smooth Muscle	rectum
31	chr10:97304400-97306200	Enhancers	Fetal Heart	heart
32	chr10:97304400-97306200	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
33	chr10:97304400-97307400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:97304400-97307600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:97304600-97306800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:97304600-97307400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:97304600-97307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:97304600-97312400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:97304800-97306800	Weak transcription	Esophagus	oesophagus
40	chr10:97304800-97307000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:97304800-97307000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:97304800-97307600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:97304800-97310200	Weak transcription	Fetal Brain Male	brain
44	chr10:97305000-97306000	Active TSS	Aorta	Aorta
45	chr10:97305000-97306200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:97305000-97306200	Weak transcription	Brain Anterior Caudate	brain
47	chr10:97305000-97306800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:97305000-97307000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:97305000-97311200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr10:97305000-97311400	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links