Variant report

Variant	rs10882616
Chromosome Location	chr10:97315416-97315417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97315253..97317391-chr10:97320414..97322052,2	K562	blood:
2	chr10:97314309..97316972-chr10:97319111..97320746,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10786218	0.85[EUR][1000 genomes]
rs10786221	0.92[ASN][1000 genomes]
rs10882614	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882615	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882617	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882618	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188355	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188357	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188359	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219483	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411861	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12416299	0.85[EUR][1000 genomes]
rs1536445	0.91[ASN][1000 genomes]
rs17458865	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs17537576	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs55873943	0.94[EUR][1000 genomes]
rs56353860	1.00[EUR][1000 genomes]
rs61869973	0.85[EUR][1000 genomes]
rs61869974	0.85[EUR][1000 genomes]
rs61869975	0.84[EUR][1000 genomes]
rs61869976	0.86[EUR][1000 genomes]
rs61870045	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61870046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61870048	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61870051	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069574	0.91[CHB][hapmap];0.92[ASN][1000 genomes]
rs7085647	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:97305200-97319000	Weak transcription	HSMM	muscle
3	chr10:97308000-97318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:97310400-97318400	Weak transcription	Fetal Kidney	kidney
5	chr10:97310800-97316800	Weak transcription	Ovary	ovary
6	chr10:97310800-97317800	Weak transcription	Pancreas	Pancrea
7	chr10:97311000-97316800	Weak transcription	Gastric	stomach
8	chr10:97311000-97318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:97311200-97317000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:97311400-97315600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:97311400-97316800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:97311400-97316800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:97311400-97316800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:97311400-97317000	Weak transcription	Brain Angular Gyrus	brain
15	chr10:97311400-97317200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:97311400-97318400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:97311600-97317400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:97312600-97317000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:97313000-97316800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:97313000-97316800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:97313000-97317200	Weak transcription	Spleen	Spleen
22	chr10:97313000-97318600	Weak transcription	Stomach Mucosa	stomach
23	chr10:97313400-97316800	Weak transcription	Fetal Brain Female	brain
24	chr10:97313400-97316800	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:97313400-97317800	Weak transcription	Lung	lung
26	chr10:97313400-97318200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:97313600-97317000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:97313800-97316800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:97313800-97316800	Weak transcription	K562	blood
30	chr10:97313800-97317200	Weak transcription	Fetal Intestine Small	intestine
31	chr10:97313800-97318400	Weak transcription	Placenta	Placenta
32	chr10:97314000-97317600	Weak transcription	Fetal Stomach	stomach
33	chr10:97314600-97315600	Enhancers	Fetal Brain Male	brain
34	chr10:97314800-97315800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:97314800-97316000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:97314800-97318200	Enhancers	Left Ventricle	heart
37	chr10:97315000-97315600	Enhancers	H1 Cell Line	embryonic stem cell
38	chr10:97315000-97315600	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
39	chr10:97315000-97315800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr10:97315000-97315800	Enhancers	Brain Cingulate Gyrus	brain
41	chr10:97315000-97316000	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr10:97315000-97316000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:97315000-97316000	Enhancers	Brain Hippocampus Middle	brain
44	chr10:97315000-97316000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr10:97315000-97316000	Flanking Active TSS	Rectal Smooth Muscle	rectum
46	chr10:97315000-97316000	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:97315000-97316200	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr10:97315000-97316200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:97315000-97316200	Enhancers	Fetal Heart	heart
50	chr10:97315000-97316800	Weak transcription	Liver	Liver

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