Variant report

Variant	rs17536344
Chromosome Location	chr10:97269830-97269831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17458865	1.00[ASW][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs17537576	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs4918940	0.85[LWK][hapmap]
rs55941659	0.82[AFR][1000 genomes]
rs61868708	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61869973	0.91[AFR][1000 genomes]
rs61869974	0.91[AFR][1000 genomes]
rs61869975	0.91[AFR][1000 genomes]
rs61869976	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17536344	C10orf131	cis	cerebellum	SCAN
rs17536344	CPEB3	cis	cerebellum	SCAN
rs17536344	CYP26A1	cis	cerebellum	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
2	chr10:97256800-97273200	Weak transcription	HSMM	muscle
3	chr10:97260000-97272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:97260800-97272800	Weak transcription	Esophagus	oesophagus
6	chr10:97261800-97271200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:97262000-97271800	Weak transcription	HMEC	breast
8	chr10:97262400-97271000	Weak transcription	Lung	lung
9	chr10:97262400-97275000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:97265200-97271000	Weak transcription	Right Ventricle	heart
12	chr10:97265200-97272000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:97265400-97270800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:97266400-97271000	Weak transcription	Brain Angular Gyrus	brain
15	chr10:97266400-97272200	Weak transcription	Fetal Brain Male	brain
16	chr10:97266400-97272800	Weak transcription	Fetal Brain Female	brain
17	chr10:97266400-97273600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:97267200-97271000	Weak transcription	Gastric	stomach
19	chr10:97267600-97275000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:97268200-97270000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:97268600-97271000	Weak transcription	Brain Substantia Nigra	brain
22	chr10:97268800-97270600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:97268800-97270800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:97268800-97272800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:97268800-97273000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:97269000-97270600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:97269000-97270600	Weak transcription	Left Ventricle	heart
28	chr10:97269000-97270600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:97269000-97270800	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:97269000-97271000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:97269000-97271000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:97269000-97271000	Weak transcription	Placenta	Placenta
33	chr10:97269000-97271000	Weak transcription	Pancreas	Pancrea
34	chr10:97269000-97271000	Enhancers	Stomach Smooth Muscle	stomach
35	chr10:97269000-97271400	Weak transcription	Liver	Liver
36	chr10:97269000-97272200	Weak transcription	Psoas Muscle	Psoas
37	chr10:97269000-97272200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:97269000-97272400	Weak transcription	HSMMtube	muscle
39	chr10:97269000-97272800	Weak transcription	Small Intestine	intestine
40	chr10:97269000-97273000	Weak transcription	Ovary	ovary
41	chr10:97269000-97273000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:97269000-97277200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
44	chr10:97269200-97270600	Weak transcription	Brain Anterior Caudate	brain
45	chr10:97269200-97270600	Weak transcription	Right Atrium	heart
46	chr10:97269200-97270600	Weak transcription	Stomach Mucosa	stomach
47	chr10:97269200-97272400	Enhancers	Colon Smooth Muscle	Colon
48	chr10:97269200-97272800	Weak transcription	HUVEC	blood vessel
49	chr10:97269200-97273800	Weak transcription	Adipose Nuclei	Adipose
50	chr10:97269200-97277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links