Variant report

Variant	rs61868706
Chromosome Location	chr10:97239899-97239900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97239375..97239913-chr10:97360587..97361534,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509690	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595114	0.83[ASN][1000 genomes]
rs12414693	0.83[ASN][1000 genomes]
rs12415079	0.83[ASN][1000 genomes]
rs12415681	0.83[ASN][1000 genomes]
rs45572141	0.82[AMR][1000 genomes]
rs55941659	0.82[AMR][1000 genomes]
rs725926	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97226400-97242600	Enhancers	Fetal Intestine Small	intestine
2	chr10:97227400-97240400	Weak transcription	Spleen	Spleen
3	chr10:97232000-97242600	Enhancers	Fetal Intestine Large	intestine
4	chr10:97232400-97242800	Enhancers	Liver	Liver
5	chr10:97233600-97242000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:97233600-97242000	Enhancers	Brain Angular Gyrus	brain
7	chr10:97233600-97242600	Enhancers	Brain Anterior Caudate	brain
8	chr10:97233600-97242800	Enhancers	Brain Cingulate Gyrus	brain
9	chr10:97233600-97242800	Enhancers	HSMM	muscle
10	chr10:97233800-97241600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:97233800-97241600	Enhancers	Fetal Brain Male	brain
12	chr10:97234000-97242800	Enhancers	Fetal Muscle Leg	muscle
13	chr10:97234200-97241600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:97234200-97241800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:97234200-97241800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:97234400-97242400	Enhancers	HSMMtube	muscle
17	chr10:97234600-97241200	Enhancers	Right Atrium	heart
18	chr10:97234800-97240000	Enhancers	Fetal Heart	heart
19	chr10:97235000-97240200	Weak transcription	Colonic Mucosa	Colon
20	chr10:97235000-97240200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:97236600-97240800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:97236600-97241200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:97236600-97241600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:97236800-97242800	Enhancers	Left Ventricle	heart
25	chr10:97237200-97240200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:97237200-97242800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:97237200-97243000	Enhancers	HepG2	liver
28	chr10:97237200-97254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:97237400-97240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:97237600-97240000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:97237600-97240400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:97237600-97240600	Weak transcription	Pancreas	Pancrea
33	chr10:97238200-97241000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr10:97238200-97242600	Weak transcription	Small Intestine	intestine
35	chr10:97238200-97242800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr10:97238400-97240400	Enhancers	Fetal Stomach	stomach
37	chr10:97238400-97240800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr10:97238400-97240800	Enhancers	HUVEC	blood vessel
39	chr10:97238400-97241000	Enhancers	Fetal Lung	lung
40	chr10:97238400-97242800	Enhancers	Brain Hippocampus Middle	brain
41	chr10:97238600-97241000	Enhancers	Placenta	Placenta
42	chr10:97238600-97241600	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr10:97238600-97242600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:97238800-97240400	Enhancers	Fetal Kidney	kidney
45	chr10:97238800-97241800	Enhancers	Aorta	Aorta
46	chr10:97239000-97240600	Enhancers	K562	blood
47	chr10:97239200-97240000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:97239200-97240000	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr10:97239200-97240400	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr10:97239200-97240800	Enhancers	Duodenum Mucosa	Duodenum

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