Variant report

Variant	rs12415079
Chromosome Location	chr10:97229543-97229544
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97220624..97225860-chr10:97227541..97231131,6	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10509690	0.83[ASN][1000 genomes]
rs11595114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414693	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61868706	0.83[ASN][1000 genomes]
rs725926	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:97219800-97229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:97220600-97232000	Enhancers	Fetal Heart	heart
5	chr10:97223200-97229600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97223200-97230200	Enhancers	Fetal Brain Male	brain
7	chr10:97223200-97234000	Weak transcription	Ovary	ovary
8	chr10:97224000-97229600	Weak transcription	Lung	lung
9	chr10:97224800-97229600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:97224800-97237000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:97225000-97229600	Weak transcription	Brain Angular Gyrus	brain
12	chr10:97226200-97230200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:97226200-97236000	Enhancers	HepG2	liver
14	chr10:97226400-97229600	Enhancers	Placenta	Placenta
15	chr10:97226400-97230400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:97226400-97230600	Enhancers	Fetal Intestine Large	intestine
17	chr10:97226400-97232200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:97226400-97232200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:97226400-97232200	Enhancers	Colon Smooth Muscle	Colon
20	chr10:97226400-97232400	Enhancers	Rectal Smooth Muscle	rectum
21	chr10:97226400-97236800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:97226400-97242600	Enhancers	Fetal Intestine Small	intestine
23	chr10:97226600-97230400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:97226800-97230400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:97226800-97230400	Enhancers	Fetal Brain Female	brain
26	chr10:97226800-97234600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr10:97227000-97229600	Enhancers	Stomach Smooth Muscle	stomach
28	chr10:97227000-97229800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:97227000-97230400	Enhancers	Fetal Muscle Leg	muscle
30	chr10:97227000-97230400	Enhancers	Psoas Muscle	Psoas
31	chr10:97227400-97229600	Weak transcription	Gastric	stomach
32	chr10:97227400-97231400	Weak transcription	Stomach Mucosa	stomach
33	chr10:97227400-97231400	Weak transcription	HSMMtube	muscle
34	chr10:97227400-97233000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:97227400-97233200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:97227400-97233400	Weak transcription	Fetal Lung	lung
37	chr10:97227400-97240400	Weak transcription	Spleen	Spleen
38	chr10:97227600-97229600	Weak transcription	K562	blood
39	chr10:97227600-97229800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr10:97227600-97235800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:97228000-97229600	Weak transcription	Esophagus	oesophagus
42	chr10:97228000-97230400	Enhancers	H1 Cell Line	embryonic stem cell
43	chr10:97228000-97230400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr10:97228200-97229800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:97228200-97230400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:97228200-97230400	Enhancers	Liver	Liver
47	chr10:97228400-97230200	Weak transcription	Fetal Stomach	stomach
48	chr10:97228400-97230400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr10:97228400-97230600	Enhancers	Brain Anterior Caudate	brain
50	chr10:97228600-97233800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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