Variant report

Variant	rs12414693
Chromosome Location	chr10:97228795-97228796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97220624..97225860-chr10:97227541..97231131,6	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10509690	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11595114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415079	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415681	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416103	1.00[JPT][hapmap]
rs61868706	0.83[ASN][1000 genomes]
rs725926	1.00[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:97219800-97229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:97220600-97232000	Enhancers	Fetal Heart	heart
5	chr10:97223200-97229600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97223200-97230200	Enhancers	Fetal Brain Male	brain
7	chr10:97223200-97234000	Weak transcription	Ovary	ovary
8	chr10:97223600-97229200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:97224000-97229600	Weak transcription	Lung	lung
10	chr10:97224600-97229400	Weak transcription	Aorta	Aorta
11	chr10:97224800-97229400	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:97224800-97229600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:97224800-97237000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:97225000-97229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:97225000-97229600	Weak transcription	Brain Angular Gyrus	brain
16	chr10:97226200-97228800	Enhancers	Brain Cingulate Gyrus	brain
17	chr10:97226200-97230200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:97226200-97236000	Enhancers	HepG2	liver
19	chr10:97226400-97229600	Enhancers	Placenta	Placenta
20	chr10:97226400-97230400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:97226400-97230600	Enhancers	Fetal Intestine Large	intestine
22	chr10:97226400-97232200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr10:97226400-97232200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr10:97226400-97232200	Enhancers	Colon Smooth Muscle	Colon
25	chr10:97226400-97232400	Enhancers	Rectal Smooth Muscle	rectum
26	chr10:97226400-97236800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:97226400-97242600	Enhancers	Fetal Intestine Small	intestine
28	chr10:97226600-97230400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:97226800-97229200	Weak transcription	Fetal Kidney	kidney
30	chr10:97226800-97230400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:97226800-97230400	Enhancers	Fetal Brain Female	brain
32	chr10:97226800-97234600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr10:97227000-97228800	Enhancers	Pancreas	Pancrea
34	chr10:97227000-97228800	Enhancers	Right Ventricle	heart
35	chr10:97227000-97229600	Enhancers	Stomach Smooth Muscle	stomach
36	chr10:97227000-97229800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:97227000-97230400	Enhancers	Fetal Muscle Leg	muscle
38	chr10:97227000-97230400	Enhancers	Psoas Muscle	Psoas
39	chr10:97227400-97229400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:97227400-97229600	Weak transcription	Gastric	stomach
41	chr10:97227400-97231400	Weak transcription	Stomach Mucosa	stomach
42	chr10:97227400-97231400	Weak transcription	HSMMtube	muscle
43	chr10:97227400-97233000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:97227400-97233200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:97227400-97233400	Weak transcription	Fetal Lung	lung
46	chr10:97227400-97240400	Weak transcription	Spleen	Spleen
47	chr10:97227600-97228800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:97227600-97229200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:97227600-97229600	Weak transcription	K562	blood
50	chr10:97227600-97229800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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