Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:50336001..50338824-chr10:50401214..50403716,2	K562	blood:
2	chr10:50337758..50340130-chr10:50341015..50343464,2	K562	blood:
3	chr10:50323173..50324677-chr10:50336521..50339264,2	K562	blood:

Variant related genes	Relation type
ENSG00000172538	Chromatin interaction
ENSG00000165633	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11592975	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11594275	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11597087	0.82[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs11597983	0.93[EUR][1000 genomes]
rs11598768	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12243520	0.87[EUR][1000 genomes]
rs2377983	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3750744	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs4073201	0.95[EUR][1000 genomes]
rs4284329	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs55687538	0.87[EUR][1000 genomes]
rs55890352	0.95[EUR][1000 genomes]
rs56364323	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57286767	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59728475	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61060205	0.95[EUR][1000 genomes]
rs61850692	0.80[EUR][1000 genomes]
rs7081097	0.87[EUR][1000 genomes]
rs7088006	0.93[EUR][1000 genomes]
rs7097375	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73302780	0.93[EUR][1000 genomes]
rs73302786	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73304754	0.87[EUR][1000 genomes]
rs7924204	0.83[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:50325000-50339400	Weak transcription	Ovary	ovary
4	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
5	chr10:50336600-50341800	Weak transcription	Fetal Thymus	thymus
6	chr10:50338000-50339400	Enhancers	Fetal Stomach	stomach
7	chr10:50338000-50340200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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