Variant report

Variant	rs55687538
Chromosome Location	chr10:50362219-50362220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50361956..50364273-chr10:50509060..50511829,2	K562	blood:
2	chr10:50360501..50363437-chr10:50365924..50369669,5	K562	blood:
3	chr10:50358294..50360224-chr10:50361427..50364405,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11100995	0.96[ASN][1000 genomes]
rs11592541	0.87[EUR][1000 genomes]
rs11592975	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594275	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594452	0.96[ASN][1000 genomes]
rs11597983	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11598768	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243520	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17782866	1.00[ASN][1000 genomes]
rs1806681	0.86[ASN][1000 genomes]
rs2246796	0.90[ASN][1000 genomes]
rs2377981	0.96[ASN][1000 genomes]
rs2377982	0.96[ASN][1000 genomes]
rs2377983	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377984	0.96[ASN][1000 genomes]
rs3750744	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073200	0.96[ASN][1000 genomes]
rs4073201	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073202	0.96[ASN][1000 genomes]
rs41306832	0.96[ASN][1000 genomes]
rs4272720	0.90[ASN][1000 genomes]
rs4284329	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838455	0.96[ASN][1000 genomes]
rs4838458	0.96[ASN][1000 genomes]
rs4838464	0.86[ASN][1000 genomes]
rs55783415	0.93[ASN][1000 genomes]
rs55890352	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364323	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56737365	0.96[ASN][1000 genomes]
rs57286767	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59728475	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61060205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081097	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088006	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7094501	0.96[ASN][1000 genomes]
rs7097375	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73302715	0.96[ASN][1000 genomes]
rs73302716	0.96[ASN][1000 genomes]
rs73302780	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73302786	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73304754	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7895212	0.93[ASN][1000 genomes]
rs7924204	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50363600	Weak transcription	Adipose Nuclei	Adipose
3	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
4	chr10:50359400-50364600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:50359400-50365200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
7	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:50359600-50362600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:50359600-50364600	Weak transcription	Fetal Thymus	thymus
10	chr10:50361400-50362600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:50361400-50362600	Enhancers	NHDF-Ad	bronchial
12	chr10:50361400-50362800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:50361600-50362600	Enhancers	HSMMtube	muscle
14	chr10:50362000-50362400	Enhancers	K562	blood
15	chr10:50362000-50362600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:50362000-50362600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:50362000-50362600	Enhancers	HSMM	muscle
18	chr10:50362000-50362600	Enhancers	NHLF	lung
19	chr10:50362000-50362600	Enhancers	Osteobl	bone
20	chr10:50362000-50362800	Enhancers	NH-A	brain
21	chr10:50362200-50370600	Weak transcription	Spleen	Spleen

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