Variant report

Variant	rs2377984
Chromosome Location	chr10:50355301-50355302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10218854	1.00[CHB][hapmap]
rs11100995	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11101001	1.00[CHB][hapmap]
rs11592975	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11594275	0.96[ASN][1000 genomes]
rs11594452	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11597983	1.00[ASN][1000 genomes]
rs11598768	0.96[ASN][1000 genomes]
rs12243520	0.96[ASN][1000 genomes]
rs17782866	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1806681	0.83[ASN][1000 genomes]
rs2246796	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2377981	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2377982	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2377983	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3750744	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4073200	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4073201	0.96[ASN][1000 genomes]
rs4073202	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41306832	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4272720	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4284329	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4838364	1.00[CHB][hapmap]
rs4838445	1.00[CHB][hapmap]
rs4838455	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4838458	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4838460	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4838464	0.83[ASN][1000 genomes]
rs55687538	0.96[ASN][1000 genomes]
rs55783415	0.97[ASN][1000 genomes]
rs55890352	0.96[ASN][1000 genomes]
rs56364323	0.96[ASN][1000 genomes]
rs56737365	0.93[ASN][1000 genomes]
rs57286767	0.96[ASN][1000 genomes]
rs59728475	0.96[ASN][1000 genomes]
rs61060205	0.96[ASN][1000 genomes]
rs61848451	0.83[AFR][1000 genomes]
rs6537495	1.00[CHB][hapmap]
rs7080670	1.00[CHB][hapmap]
rs7081097	0.96[ASN][1000 genomes]
rs7088006	1.00[ASN][1000 genomes]
rs7094220	1.00[CHB][hapmap]
rs7094501	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7096516	1.00[CHB][hapmap]
rs7097375	0.96[ASN][1000 genomes]
rs73302715	0.93[ASN][1000 genomes]
rs73302716	0.93[ASN][1000 genomes]
rs73302780	1.00[ASN][1000 genomes]
rs73302786	0.96[ASN][1000 genomes]
rs7895212	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7924204	1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:50349600-50357200	Weak transcription	HSMM	muscle
3	chr10:50354400-50358000	Weak transcription	NHDF-Ad	bronchial
4	chr10:50354400-50362000	Weak transcription	K562	blood
5	chr10:50355000-50356800	ZNF genes & repeats	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links