Variant report

Variant	rs73302715
Chromosome Location	chr10:50294728-50294729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10219080	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11100991	0.91[AMR][1000 genomes]
rs11100995	0.93[ASN][1000 genomes]
rs11592975	0.96[ASN][1000 genomes]
rs11594275	0.96[ASN][1000 genomes]
rs11594452	0.93[ASN][1000 genomes]
rs11597983	0.93[ASN][1000 genomes]
rs11598768	0.96[ASN][1000 genomes]
rs11818606	1.00[EUR][1000 genomes]
rs12243520	0.96[ASN][1000 genomes]
rs12243870	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12254230	1.00[EUR][1000 genomes]
rs12258104	0.91[AMR][1000 genomes]
rs12258230	0.91[AMR][1000 genomes]
rs12268209	0.91[AMR][1000 genomes]
rs17782866	0.96[ASN][1000 genomes]
rs1806681	0.83[ASN][1000 genomes]
rs2246796	0.93[ASN][1000 genomes]
rs2377950	1.00[EUR][1000 genomes]
rs2377981	0.93[ASN][1000 genomes]
rs2377982	0.93[ASN][1000 genomes]
rs2377983	0.96[ASN][1000 genomes]
rs2377984	0.93[ASN][1000 genomes]
rs3750744	0.96[ASN][1000 genomes]
rs4073200	0.93[ASN][1000 genomes]
rs4073201	0.96[ASN][1000 genomes]
rs4073202	0.93[ASN][1000 genomes]
rs41306832	0.93[ASN][1000 genomes]
rs4272720	0.93[ASN][1000 genomes]
rs4284329	0.93[ASN][1000 genomes]
rs4442460	0.91[AMR][1000 genomes]
rs4483511	0.91[AMR][1000 genomes]
rs4838455	0.93[ASN][1000 genomes]
rs4838458	0.93[ASN][1000 genomes]
rs4838464	0.83[ASN][1000 genomes]
rs55687538	0.96[ASN][1000 genomes]
rs55783415	0.90[ASN][1000 genomes]
rs55890352	0.96[ASN][1000 genomes]
rs56364323	0.96[ASN][1000 genomes]
rs56737365	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57286767	0.96[ASN][1000 genomes]
rs59728475	0.96[ASN][1000 genomes]
rs61060205	0.96[ASN][1000 genomes]
rs7067828	0.83[AMR][1000 genomes]
rs7067848	0.91[AMR][1000 genomes]
rs7068517	0.91[AMR][1000 genomes]
rs7073721	1.00[EUR][1000 genomes]
rs7077339	0.91[AMR][1000 genomes]
rs7081097	0.96[ASN][1000 genomes]
rs7083685	0.91[AMR][1000 genomes]
rs7088006	0.93[ASN][1000 genomes]
rs7094220	0.82[AFR][1000 genomes]
rs7094501	0.93[ASN][1000 genomes]
rs7095186	0.91[AMR][1000 genomes]
rs7097375	0.96[ASN][1000 genomes]
rs73301000	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73302706	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73302716	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73302759	0.91[AMR][1000 genomes]
rs73302780	0.93[ASN][1000 genomes]
rs73302786	0.96[ASN][1000 genomes]
rs73304705	0.91[AMR][1000 genomes]
rs73304711	0.91[AMR][1000 genomes]
rs7895212	0.90[ASN][1000 genomes]
rs7923767	1.00[EUR][1000 genomes]
rs7924204	0.96[ASN][1000 genomes]
rs9804303	0.91[AMR][1000 genomes]
rs9804328	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50283200-50298200	Weak transcription	Spleen	Spleen
2	chr10:50289600-50298800	Weak transcription	Fetal Thymus	thymus
3	chr10:50290200-50298200	Weak transcription	Colonic Mucosa	Colon
4	chr10:50290400-50295000	Weak transcription	K562	blood
5	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:50291200-50297200	Weak transcription	Lung	lung
7	chr10:50291800-50299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:50292200-50296400	Weak transcription	Right Atrium	heart
9	chr10:50292200-50296600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
12	chr10:50293200-50296400	Weak transcription	Right Ventricle	heart
13	chr10:50293200-50297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:50293400-50296600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:50293400-50296600	Weak transcription	Fetal Stomach	stomach
16	chr10:50293400-50296800	Weak transcription	Ovary	ovary
17	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:50294200-50294800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr10:50294200-50295600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:50294200-50295800	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr10:50294400-50294800	ZNF genes & repeats	Brain Angular Gyrus	brain
22	chr10:50294400-50295200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
23	chr10:50294400-50295600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:50294400-50295800	ZNF genes & repeats	Fetal Lung	lung
25	chr10:50294600-50295200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:50294600-50296600	Weak transcription	Left Ventricle	heart

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