Variant report

Variant	rs2377950
Chromosome Location	chr10:50391355-50391356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr10:50390945-50391361	K562	blood:	n/a	n/a
2	EP300	chr10:50390773-50391364	K562	blood:	n/a	n/a
3	IRF1	chr10:50389643-50393159	K562	blood:	n/a	chr10:50390779-50390788 chr10:50393131-50393140 chr10:50391901-50391910
4	MYC	chr10:50390818-50392547	K562	blood:	n/a	n/a
5	EP300	chr10:50391245-50391454	K562	blood:	n/a	n/a
6	JUN	chr10:50390896-50391421	K562	blood:	n/a	n/a
7	UBTF	chr10:50391260-50391980	K562	blood:	n/a	n/a
8	ARID3A	chr10:50390082-50393165	K562	blood:	n/a	n/a
9	POLR2A	chr10:50389942-50393522	K562	blood:	n/a	n/a
10	CUX1	chr10:50390790-50393282	K562	blood:	n/a	n/a
11	IRF1	chr10:50390867-50392552	K562	blood:	n/a	chr10:50391901-50391910
12	MYC	chr10:50390857-50392310	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:50389858..50391457-chr10:50482745..50485409,2	K562	blood:
2	chr10:50388735..50392807-chr10:50413535..50416257,3	K562	blood:
3	chr10:50389858..50392906-chr10:50482187..50485409,3	K562	blood:
4	chr10:50390209..50392807-chr10:50413180..50415215,3	K562	blood:

Variant related genes	Relation type
C10orf128	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10745252	1.00[ASN][1000 genomes]
rs10776546	1.00[ASN][1000 genomes]
rs10857443	1.00[ASN][1000 genomes]
rs10857445	1.00[ASN][1000 genomes]
rs11593489	1.00[ASN][1000 genomes]
rs11818606	1.00[EUR][1000 genomes]
rs12254230	1.00[EUR][1000 genomes]
rs2002392	1.00[ASN][1000 genomes]
rs2377951	1.00[ASN][1000 genomes]
rs2377952	1.00[ASN][1000 genomes]
rs2377985	1.00[ASN][1000 genomes]
rs2377987	1.00[ASN][1000 genomes]
rs2377991	1.00[ASN][1000 genomes]
rs2377992	1.00[ASN][1000 genomes]
rs2889807	1.00[ASN][1000 genomes]
rs4514329	1.00[ASN][1000 genomes]
rs4838372	1.00[ASN][1000 genomes]
rs4838465	1.00[ASN][1000 genomes]
rs56737365	1.00[EUR][1000 genomes]
rs6537509	1.00[ASN][1000 genomes]
rs6537510	1.00[ASN][1000 genomes]
rs7073721	1.00[EUR][1000 genomes]
rs7094605	1.00[ASN][1000 genomes]
rs73302715	1.00[EUR][1000 genomes]
rs73302716	1.00[EUR][1000 genomes]
rs7394346	1.00[ASN][1000 genomes]
rs7893648	1.00[ASN][1000 genomes]
rs7904886	1.00[EUR][1000 genomes]
rs7906560	1.00[ASN][1000 genomes]
rs7912808	1.00[ASN][1000 genomes]
rs7922135	1.00[ASN][1000 genomes]
rs7923767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645532	1.00[ASN][1000 genomes]
rs9645533	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50376800-50395200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:50381800-50394800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:50383400-50395200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:50384400-50396000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:50385400-50391800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:50386000-50394800	Weak transcription	Brain Anterior Caudate	brain
7	chr10:50386000-50395200	Weak transcription	Psoas Muscle	Psoas
8	chr10:50386200-50391600	Weak transcription	HUVEC	blood vessel
9	chr10:50386200-50392800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:50386200-50396000	Weak transcription	Placenta	Placenta
11	chr10:50386400-50392400	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:50386400-50395200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:50386600-50391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:50386600-50391800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:50386600-50395200	Weak transcription	Lung	lung
16	chr10:50386600-50395200	Weak transcription	Right Ventricle	heart
17	chr10:50386800-50395200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:50387000-50394600	Weak transcription	Brain Substantia Nigra	brain
19	chr10:50387200-50391600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:50387400-50391600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr10:50387600-50391600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:50388400-50391600	Weak transcription	Adipose Nuclei	Adipose
23	chr10:50388400-50391600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:50388400-50392800	Weak transcription	Right Atrium	heart
25	chr10:50388400-50394800	Weak transcription	Colonic Mucosa	Colon
26	chr10:50388600-50391600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:50388600-50391600	Weak transcription	Fetal Thymus	thymus
28	chr10:50388600-50392400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:50389600-50392600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:50389800-50392800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:50390200-50391600	Enhancers	Dnd41	blood
32	chr10:50390200-50393200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:50390400-50391400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:50390400-50391600	Weak transcription	Primary B cells from cord blood	blood
35	chr10:50390400-50391600	Weak transcription	GM12878-XiMat	blood
36	chr10:50390400-50392600	Weak transcription	Fetal Lung	lung
37	chr10:50390800-50394000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:50391000-50391400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:50391000-50391800	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr10:50391000-50393600	Enhancers	Left Ventricle	heart
41	chr10:50391200-50391600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:50391200-50391600	Weak transcription	Spleen	Spleen
43	chr10:50391200-50391600	Active TSS	K562	blood

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