Variant report

Variant	rs4838465
Chromosome Location	chr10:50388736-50388737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr10:50388295-50389089	K562	blood:	n/a	n/a
2	RELA	chr10:50388062-50388826	GM19099	blood:	n/a	n/a
3	NFIC	chr10:50388288-50388905	GM12878	blood:	n/a	n/a
4	ZNF384	chr10:50388340-50388868	K562	blood:	n/a	n/a
5	JUND	chr10:50388345-50388892	K562	blood:	n/a	n/a
6	EP300	chr10:50388176-50388820	GM12878	blood:	n/a	n/a
7	EP300	chr10:50388245-50388874	GM12878	blood:	n/a	n/a
8	ARID3A	chr10:50388505-50389675	K562	blood:	n/a	n/a
9	TBL1XR1	chr10:50388313-50388956	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:50388735..50392807-chr10:50413535..50416257,3	K562	blood:
2	chr10:50387072..50388785-chr10:50574135..50575972,2	K562	blood:
3	chr10:50388067..50390396-chr10:50495469..50498227,2	K562	blood:

No data

Variant related genes	Relation type
C10orf128	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10745252	1.00[ASN][1000 genomes]
rs10776546	1.00[ASN][1000 genomes]
rs10857443	1.00[ASN][1000 genomes]
rs10857445	1.00[ASN][1000 genomes]
rs11593489	1.00[ASN][1000 genomes]
rs2002392	1.00[ASN][1000 genomes]
rs2377950	1.00[ASN][1000 genomes]
rs2377951	1.00[CEU][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377952	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377985	1.00[ASN][1000 genomes]
rs2377987	1.00[ASN][1000 genomes]
rs2377991	1.00[ASN][1000 genomes]
rs2377992	1.00[ASN][1000 genomes]
rs2889807	1.00[ASN][1000 genomes]
rs41280541	0.84[EUR][1000 genomes]
rs4433499	1.00[CEU][hapmap]
rs4514329	1.00[ASN][1000 genomes]
rs4838372	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61743431	0.84[EUR][1000 genomes]
rs61748312	0.88[EUR][1000 genomes]
rs6537509	1.00[ASN][1000 genomes]
rs6537510	1.00[ASN][1000 genomes]
rs7068519	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7094605	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7394346	1.00[ASN][1000 genomes]
rs7893648	1.00[ASN][1000 genomes]
rs7906560	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912808	1.00[ASN][1000 genomes]
rs7922135	1.00[ASN][1000 genomes]
rs7923767	1.00[ASN][1000 genomes]
rs9645532	1.00[ASN][1000 genomes]
rs9645533	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50376800-50395200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:50381800-50394800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:50382200-50390000	Enhancers	K562	blood
4	chr10:50383400-50395200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50384200-50389600	Enhancers	Primary B cells from cord blood	blood
6	chr10:50384400-50396000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:50385400-50391800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:50385600-50390000	Weak transcription	Fetal Lung	lung
9	chr10:50385800-50389200	Enhancers	GM12878-XiMat	blood
10	chr10:50386000-50390800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:50386000-50394800	Weak transcription	Brain Anterior Caudate	brain
12	chr10:50386000-50395200	Weak transcription	Psoas Muscle	Psoas
13	chr10:50386200-50389200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:50386200-50391600	Weak transcription	HUVEC	blood vessel
15	chr10:50386200-50392800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:50386200-50396000	Weak transcription	Placenta	Placenta
17	chr10:50386400-50392400	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:50386400-50395200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:50386600-50391000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:50386600-50391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:50386600-50391800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:50386600-50395200	Weak transcription	Lung	lung
23	chr10:50386600-50395200	Weak transcription	Right Ventricle	heart
24	chr10:50386800-50395200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:50387000-50394600	Weak transcription	Brain Substantia Nigra	brain
26	chr10:50387200-50391600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:50387400-50390000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:50387400-50391600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr10:50387600-50391600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr10:50387800-50389400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:50388200-50389600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr10:50388400-50389800	Weak transcription	HSMMtube	muscle
33	chr10:50388400-50391600	Weak transcription	Adipose Nuclei	Adipose
34	chr10:50388400-50391600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:50388400-50392800	Weak transcription	Right Atrium	heart
36	chr10:50388400-50394800	Weak transcription	Colonic Mucosa	Colon
37	chr10:50388600-50389000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:50388600-50389000	Weak transcription	Dnd41	blood
39	chr10:50388600-50389200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:50388600-50390800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:50388600-50391000	Weak transcription	Left Ventricle	heart
42	chr10:50388600-50391000	Weak transcription	Spleen	Spleen
43	chr10:50388600-50391600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr10:50388600-50391600	Weak transcription	Fetal Thymus	thymus
45	chr10:50388600-50392400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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