Variant report

Variant	rs4433499
Chromosome Location	chr10:50328795-50328796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:50328764-50329123	K562	blood:	n/a	chr10:50328986-50328999 chr10:50328988-50328998 chr10:50328987-50328998 chr10:50328989-50328996 chr10:50328987-50328998 chr10:50328988-50328997 chr10:50328986-50329001 chr10:50328988-50328997 chr10:50328984-50328999
2	CTCF	chr10:50328700-50328850	WERI-Rb-1	eye:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50327680..50329332-chr10:50338988..50341061,2	K562	blood:
2	chr10:50281055..50283973-chr10:50326395..50329291,2	K562	blood:

Variant related genes	Relation type
FAM170B-AS1	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11100987	0.95[ASN][1000 genomes]
rs12247475	1.00[ASN][1000 genomes]
rs12264188	1.00[ASN][1000 genomes]
rs2377951	1.00[CEU][hapmap]
rs2377952	1.00[CEU][hapmap]
rs41280541	0.95[EUR][1000 genomes]
rs41306411	1.00[EUR][1000 genomes]
rs4550152	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4838369	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4838448	1.00[ASN][1000 genomes]
rs4838450	1.00[ASN][1000 genomes]
rs4838465	1.00[CEU][hapmap]
rs59598256	1.00[ASN][1000 genomes]
rs61743431	0.95[EUR][1000 genomes]
rs61748312	0.90[EUR][1000 genomes]
rs61848422	1.00[ASN][1000 genomes]
rs61848450	1.00[ASN][1000 genomes]
rs6537498	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7068519	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7895377	1.00[ASN][1000 genomes]
rs7904486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905794	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	esv1818143	chr10:50323229-50332930	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:50325000-50339400	Weak transcription	Ovary	ovary
4	chr10:50326800-50328800	Weak transcription	Thymus	Thymus
5	chr10:50327600-50330200	Enhancers	Fetal Thymus	thymus
6	chr10:50328000-50329000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:50328400-50328800	Weak transcription	HSMMtube	muscle
8	chr10:50328400-50329000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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