Variant report

Variant	rs7905794
Chromosome Location	chr10:50303455-50303456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50303445..50305723-chr10:50315132..50317304,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10218854	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10735227	1.00[CHB][hapmap]
rs10745288	1.00[CHB][hapmap]
rs10745289	1.00[CHB][hapmap]
rs10776655	1.00[CHB][hapmap]
rs12243870	0.80[YRI][hapmap]
rs1317894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17011698	0.84[EUR][1000 genomes]
rs17011795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011910	0.81[EUR][1000 genomes]
rs1913524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2137918	0.88[ASN][1000 genomes]
rs2137919	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2137921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2244085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2244704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2244777	0.85[JPT][hapmap]
rs2252692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2254632	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2377632	1.00[CHB][hapmap]
rs2377649	1.00[CHB][hapmap]
rs2377694	1.00[CHB][hapmap]
rs2458674	1.00[CHB][hapmap]
rs2466749	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2466750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2663018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2663024	1.00[CHB][hapmap]
rs2663027	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2663058	1.00[CHB][hapmap]
rs2663061	1.00[CHB][hapmap]
rs2663062	1.00[CHB][hapmap]
rs2671690	0.81[ASN][1000 genomes]
rs2671698	1.00[CHB][hapmap]
rs2671699	1.00[CHB][hapmap]
rs2671700	1.00[CHB][hapmap]
rs2889691	1.00[CHB][hapmap]
rs2943248	1.00[CHB][hapmap]
rs3750866	1.00[CHB][hapmap]
rs3810953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3849151	1.00[CHB][hapmap]
rs3849152	1.00[CHB][hapmap]
rs4012668	0.81[EUR][1000 genomes]
rs41301107	0.84[EUR][1000 genomes]
rs4433499	1.00[JPT][hapmap]
rs4550152	1.00[JPT][hapmap]
rs4838362	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4838364	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4838368	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4838369	1.00[JPT][hapmap]
rs4838445	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4838459	0.84[EUR][1000 genomes]
rs4838663	1.00[JPT][hapmap]
rs57328384	0.84[EUR][1000 genomes]
rs58144692	0.81[ASN][1000 genomes]
rs61167870	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61848154	0.81[EUR][1000 genomes]
rs61848421	0.86[EUR][1000 genomes]
rs61848427	0.81[EUR][1000 genomes]
rs61848428	0.81[EUR][1000 genomes]
rs61848429	0.81[EUR][1000 genomes]
rs61848430	0.81[EUR][1000 genomes]
rs61850676	0.81[EUR][1000 genomes]
rs61850680	0.84[EUR][1000 genomes]
rs6537495	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6537498	1.00[JPT][hapmap]
rs7068519	1.00[JPT][hapmap]
rs7069441	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7069844	1.00[JPT][hapmap]
rs7070829	0.81[EUR][1000 genomes]
rs7078930	0.81[EUR][1000 genomes]
rs7080003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7080670	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7090938	0.92[ASN][1000 genomes]
rs7094220	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7094724	1.00[CHB][hapmap]
rs7096516	1.00[CEU][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7096721	0.92[ASN][1000 genomes]
rs7101339	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72783159	0.81[EUR][1000 genomes]
rs72785049	0.88[EUR][1000 genomes]
rs73298923	0.85[ASN][1000 genomes]
rs7393292	0.86[EUR][1000 genomes]
rs7895063	0.81[ASN][1000 genomes]
rs7897563	0.84[EUR][1000 genomes]
rs7898774	0.92[ASN][1000 genomes]
rs7899524	0.89[YRI][hapmap]
rs7911009	1.00[CHB][hapmap]
rs7912676	0.85[ASN][1000 genomes]
rs7914464	0.81[ASN][1000 genomes]
rs7915922	0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
3	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:50295800-50311600	Weak transcription	K562	blood
5	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
6	chr10:50297600-50303800	Genic enhancers	Fetal Muscle Trunk	muscle
7	chr10:50298600-50306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
10	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
11	chr10:50298800-50304200	Weak transcription	Fetal Heart	heart
12	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
13	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
14	chr10:50299400-50303600	Weak transcription	Lung	lung
15	chr10:50299600-50307400	Strong transcription	Fetal Stomach	stomach
16	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
18	chr10:50300800-50312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:50301600-50305400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:50302200-50303800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:50302200-50304000	Enhancers	Left Ventricle	heart
23	chr10:50302200-50304000	Enhancers	Right Atrium	heart
24	chr10:50302200-50304000	Enhancers	NHLF	lung
25	chr10:50302200-50304400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:50302200-50304600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:50302400-50303600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:50302400-50303600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:50302400-50305200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:50302400-50306000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:50302600-50303800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:50302600-50304000	Enhancers	Brain Angular Gyrus	brain
33	chr10:50302800-50303800	Genic enhancers	Ovary	ovary
34	chr10:50302800-50304000	Enhancers	Right Ventricle	heart
35	chr10:50303200-50303600	Weak transcription	Esophagus	oesophagus
36	chr10:50303200-50303800	Enhancers	Psoas Muscle	Psoas
37	chr10:50303200-50304000	Enhancers	Adipose Nuclei	Adipose
38	chr10:50303200-50310600	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:50303200-50314600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:50303400-50313600	Weak transcription	Brain Substantia Nigra	brain
41	chr10:50303400-50314400	Weak transcription	Brain Anterior Caudate	brain

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