Variant report

Variant	rs2663027
Chromosome Location	chr10:50158494-50158495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50088545..50090341-chr10:50157319..50159883,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1054553	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10735227	1.00[CHB][hapmap]
rs10745288	1.00[CHB][hapmap]
rs10745289	1.00[CHB][hapmap]
rs10776655	1.00[CHB][hapmap]
rs10776656	1.00[CHB][hapmap]
rs10857659	1.00[CHB][hapmap]
rs1317894	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17011795	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1913524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2137918	0.83[ASN][1000 genomes]
rs2137921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2244085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2244704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2244777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2252692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2377632	1.00[CHB][hapmap]
rs2377649	1.00[CHB][hapmap]
rs2377694	1.00[CHB][hapmap]
rs2458674	1.00[CHB][hapmap]
rs2466749	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2466750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663017	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2663018	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2663024	1.00[CHB][hapmap]
rs2663058	1.00[CHB][hapmap]
rs2663061	1.00[CHB][hapmap]
rs2663062	1.00[CHB][hapmap]
rs2671690	0.83[ASN][1000 genomes]
rs2671698	1.00[CHB][hapmap]
rs2671699	1.00[CHB][hapmap]
rs2671700	1.00[CHB][hapmap]
rs2671701	1.00[CHB][hapmap]
rs2671714	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2671716	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2889691	1.00[CHB][hapmap]
rs2943248	1.00[CHB][hapmap]
rs3750866	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs3810953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3849151	1.00[CHB][hapmap]
rs3849152	1.00[CHB][hapmap]
rs41283297	1.00[EUR][1000 genomes]
rs4838663	1.00[JPT][hapmap]
rs57406661	1.00[ASN][1000 genomes]
rs58144692	0.83[ASN][1000 genomes]
rs59221892	1.00[EUR][1000 genomes]
rs59354363	1.00[EUR][1000 genomes]
rs59965106	1.00[EUR][1000 genomes]
rs60312033	1.00[ASN][1000 genomes]
rs7069844	1.00[JPT][hapmap]
rs7080003	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7094724	1.00[CHB][hapmap]
rs73298906	1.00[ASN][1000 genomes]
rs73298923	0.86[ASN][1000 genomes]
rs7895063	0.83[ASN][1000 genomes]
rs7905794	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7911009	1.00[CHB][hapmap]
rs7914464	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50134600-50160400	Weak transcription	Right Atrium	heart
2	chr10:50143600-50164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
4	chr10:50145000-50193200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:50145400-50193200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:50145800-50193400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:50148000-50193600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:50149600-50161200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:50150400-50159000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:50153400-50187800	Strong transcription	GM12878-XiMat	blood
11	chr10:50153600-50193600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:50154400-50159200	Strong transcription	Primary hematopoietic stem cells	blood
13	chr10:50154600-50160400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:50154600-50162000	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:50154800-50165800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:50155000-50160000	Weak transcription	Aorta	Aorta
17	chr10:50155200-50158800	Weak transcription	Spleen	Spleen
18	chr10:50155800-50158800	Weak transcription	Lung	lung
19	chr10:50156200-50158800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:50157400-50166000	Weak transcription	Primary T cells from cord blood	blood
21	chr10:50158200-50158800	Enhancers	HUVEC	blood vessel
22	chr10:50158400-50161200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links