Variant report

Variant	rs7069844
Chromosome Location	chr10:50306129-50306130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12264188	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1317894	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17011795	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1913524	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2137918	0.81[ASN][1000 genomes]
rs2137921	1.00[JPT][hapmap]
rs2244085	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2244704	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2244777	0.88[JPT][hapmap]
rs2252692	1.00[JPT][hapmap]
rs2466749	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2466750	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2663018	1.00[JPT][hapmap]
rs2663027	1.00[JPT][hapmap]
rs3810953	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4550152	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4838369	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4838448	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4838450	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4838457	0.90[EUR][1000 genomes]
rs4838462	0.86[EUR][1000 genomes]
rs4838463	0.86[EUR][1000 genomes]
rs4838663	1.00[JPT][hapmap]
rs57844252	0.81[EUR][1000 genomes]
rs60022174	0.90[EUR][1000 genomes]
rs61848422	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6537498	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7080003	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096721	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895377	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7898774	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898865	0.86[EUR][1000 genomes]
rs7899524	0.90[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905794	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7912676	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
3	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:50295800-50311600	Weak transcription	K562	blood
5	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
7	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
8	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
9	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
10	chr10:50299600-50307400	Strong transcription	Fetal Stomach	stomach
11	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
13	chr10:50300800-50312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:50303200-50310600	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:50303200-50314600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:50303400-50313600	Weak transcription	Brain Substantia Nigra	brain
18	chr10:50303400-50314400	Weak transcription	Brain Anterior Caudate	brain
19	chr10:50303600-50314400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:50303600-50314400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:50303800-50306200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:50303800-50306600	Enhancers	Ovary	ovary
23	chr10:50303800-50314600	Weak transcription	Esophagus	oesophagus
24	chr10:50304000-50309600	Weak transcription	Adipose Nuclei	Adipose
25	chr10:50304000-50314400	Weak transcription	Brain Angular Gyrus	brain
26	chr10:50304600-50307000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:50304600-50314400	Weak transcription	Liver	Liver
28	chr10:50304800-50317600	Weak transcription	Fetal Heart	heart
29	chr10:50305000-50306400	Enhancers	Right Atrium	heart
30	chr10:50305000-50306600	Enhancers	Right Ventricle	heart
31	chr10:50305000-50306800	Genic enhancers	Fetal Muscle Trunk	muscle
32	chr10:50305000-50307000	Enhancers	Left Ventricle	heart
33	chr10:50305000-50307800	Genic enhancers	Fetal Muscle Leg	muscle
34	chr10:50305400-50307400	Strong transcription	Stomach Smooth Muscle	stomach
35	chr10:50305400-50314400	Weak transcription	NHLF	lung
36	chr10:50305800-50313600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:50306000-50307400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:50306000-50307400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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