Variant report

Variant	rs6537498
Chromosome Location	chr10:50336864-50336865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50331517..50334142-chr10:50335881..50337870,2	K562	blood:
2	chr10:50336001..50338824-chr10:50401214..50403716,2	K562	blood:
3	chr10:50323173..50324677-chr10:50336521..50339264,2	K562	blood:
4	chr10:50331517..50334584-chr10:50334823..50337870,3	K562	blood:

Variant related genes	Relation type
ENSG00000165633	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11100987	0.95[ASN][1000 genomes]
rs12247475	1.00[ASN][1000 genomes]
rs12264188	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433499	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4550152	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838368	0.81[GIH][hapmap]
rs4838369	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838448	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838450	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838457	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs4838462	0.91[EUR][1000 genomes]
rs4838463	0.91[EUR][1000 genomes]
rs57844252	0.86[EUR][1000 genomes]
rs59598256	1.00[ASN][1000 genomes]
rs60022174	0.95[EUR][1000 genomes]
rs61848422	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848450	1.00[ASN][1000 genomes]
rs7068519	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7080003	1.00[GIH][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7090938	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7096721	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7895377	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898774	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7898865	0.91[EUR][1000 genomes]
rs7899524	1.00[GIH][hapmap];0.95[EUR][1000 genomes]
rs7904486	1.00[ASN][1000 genomes]
rs7905794	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:50325000-50339400	Weak transcription	Ovary	ovary
4	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
5	chr10:50336600-50341800	Weak transcription	Fetal Thymus	thymus

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