Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:50355645..50357503-chr10:50357925..50361172,3	K562	blood:
2	chr10:50360501..50363437-chr10:50365924..50369669,5	K562	blood:
3	chr10:50322474..50324170-chr10:50359110..50361723,2	K562	blood:
4	chr10:50358426..50360666-chr10:50372410..50375514,3	K562	blood:
5	chr10:50358962..50361872-chr10:50363611..50365233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction
ENSG00000165633	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11100986	1.00[ASN][1000 genomes]
rs12264188	0.86[EUR][1000 genomes]
rs17011899	1.00[ASN][1000 genomes]
rs41280539	1.00[ASN][1000 genomes]
rs4550152	0.86[EUR][1000 genomes]
rs4838369	0.86[EUR][1000 genomes]
rs4838448	0.83[EUR][1000 genomes]
rs4838450	0.86[EUR][1000 genomes]
rs4838457	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838462	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838463	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60022174	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848422	0.86[EUR][1000 genomes]
rs6537498	0.86[EUR][1000 genomes]
rs7080003	0.81[EUR][1000 genomes]
rs7085702	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7090938	0.81[EUR][1000 genomes]
rs7096721	0.81[EUR][1000 genomes]
rs72785093	1.00[ASN][1000 genomes]
rs7895377	0.86[EUR][1000 genomes]
rs7898865	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899524	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50354400-50362000	Weak transcription	K562	blood
2	chr10:50358400-50361600	Weak transcription	HSMMtube	muscle
3	chr10:50358600-50361400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:50358800-50362000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:50359000-50361200	Weak transcription	Psoas Muscle	Psoas
6	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
7	chr10:50359200-50362000	Weak transcription	HSMM	muscle
8	chr10:50359200-50363600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
10	chr10:50359400-50361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:50359400-50364600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:50359400-50365200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
14	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:50359600-50362600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:50359600-50364600	Weak transcription	Fetal Thymus	thymus
17	chr10:50359800-50361400	Weak transcription	NHDF-Ad	bronchial
18	chr10:50360000-50361400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:50360400-50360600	Enhancers	Fetal Lung	lung

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