Variant report

Variant	rs7085702
Chromosome Location	chr10:50357113-50357114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11100986	1.00[ASN][1000 genomes]
rs17011899	1.00[ASN][1000 genomes]
rs17011910	0.83[EUR][1000 genomes]
rs41280539	1.00[ASN][1000 genomes]
rs41301107	0.81[EUR][1000 genomes]
rs4838368	0.83[EUR][1000 genomes]
rs4838457	1.00[ASN][1000 genomes]
rs4838459	0.81[EUR][1000 genomes]
rs4838462	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4838463	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56192862	0.86[EUR][1000 genomes]
rs57844252	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58473966	0.81[EUR][1000 genomes]
rs59461690	0.86[EUR][1000 genomes]
rs60022174	1.00[ASN][1000 genomes]
rs61848427	0.83[EUR][1000 genomes]
rs61848428	0.83[EUR][1000 genomes]
rs61848429	0.83[EUR][1000 genomes]
rs61848430	0.83[EUR][1000 genomes]
rs61848432	0.86[EUR][1000 genomes]
rs61848455	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6537500	0.86[EUR][1000 genomes]
rs7070829	0.83[EUR][1000 genomes]
rs7078930	0.83[EUR][1000 genomes]
rs72785093	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898865	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7902240	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7914194	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:50349600-50357200	Weak transcription	HSMM	muscle
3	chr10:50354400-50358000	Weak transcription	NHDF-Ad	bronchial
4	chr10:50354400-50362000	Weak transcription	K562	blood
5	chr10:50356400-50359200	Enhancers	Fetal Stomach	stomach
6	chr10:50356800-50358400	Enhancers	HSMMtube	muscle
7	chr10:50357000-50357200	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:50357000-50358000	Enhancers	Fetal Lung	lung
9	chr10:50357000-50359600	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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