Variant report

Variant	rs61848455
Chromosome Location	chr10:50367881-50367882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50360501..50363437-chr10:50365924..50369669,5	K562	blood:
2	chr10:50364786..50371686-chr10:50371829..50376692,10	K562	blood:
3	chr10:50363975..50366522-chr10:50367488..50370689,4	K562	blood:
4	chr10:50343637..50346053-chr10:50366272..50368285,3	K562	blood:

Variant related genes	Relation type
ENSG00000234736	Chromatin interaction
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10218854	0.83[EUR][1000 genomes]
rs17011698	0.81[EUR][1000 genomes]
rs17011795	0.86[EUR][1000 genomes]
rs17011910	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41301107	0.90[EUR][1000 genomes]
rs4838364	0.83[EUR][1000 genomes]
rs4838368	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4838445	0.83[EUR][1000 genomes]
rs4838459	0.90[EUR][1000 genomes]
rs56192862	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57328384	0.81[EUR][1000 genomes]
rs58473966	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59461690	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61167870	0.88[EUR][1000 genomes]
rs61848421	0.88[EUR][1000 genomes]
rs61848427	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848428	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848429	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848430	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848432	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61850680	0.81[EUR][1000 genomes]
rs6537495	0.83[EUR][1000 genomes]
rs6537500	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7069441	0.83[EUR][1000 genomes]
rs7070829	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7078930	0.93[EUR][1000 genomes]
rs7080670	0.83[EUR][1000 genomes]
rs7085702	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7094220	0.83[EUR][1000 genomes]
rs7096516	0.83[EUR][1000 genomes]
rs7101339	0.83[EUR][1000 genomes]
rs72785049	0.86[EUR][1000 genomes]
rs72785093	0.85[EUR][1000 genomes]
rs7393292	0.88[EUR][1000 genomes]
rs7897563	0.81[EUR][1000 genomes]
rs7902240	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7914194	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7915922	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
4	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:50362200-50370600	Weak transcription	Spleen	Spleen
6	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50365200-50368600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:50365400-50374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:50365400-50374800	Weak transcription	Lung	lung
10	chr10:50365600-50369400	Weak transcription	Fetal Thymus	thymus
11	chr10:50365800-50368000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:50366000-50373600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:50366200-50378200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:50366600-50369400	Enhancers	K562	blood
15	chr10:50366600-50369600	Weak transcription	Brain Substantia Nigra	brain
16	chr10:50366800-50368200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:50366800-50369400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:50366800-50369400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:50366800-50370200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:50366800-50372400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:50366800-50375400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:50367200-50368800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:50367400-50368000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:50367400-50369600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:50367600-50368000	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr10:50367600-50368200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr10:50367600-50369200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:50367600-50376200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:50367600-50384600	Weak transcription	Dnd41	blood
30	chr10:50367800-50368000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:50367800-50369400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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