Variant report

Variant	rs61850680
Chromosome Location	chr10:50248542-50248543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50240413..50242966-chr10:50247127..50249363,2	K562	blood:
2	chr10:50239471..50243603-chr10:50247127..50250365,5	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10218854	0.92[EUR][1000 genomes]
rs17011603	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011698	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011795	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17011910	0.87[EUR][1000 genomes]
rs17700453	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1913524	0.92[EUR][1000 genomes]
rs2137918	0.92[EUR][1000 genomes]
rs2137919	0.97[EUR][1000 genomes]
rs2244085	0.97[EUR][1000 genomes]
rs2244704	0.85[EUR][1000 genomes]
rs2254632	0.97[EUR][1000 genomes]
rs2466749	0.97[EUR][1000 genomes]
rs2466750	0.97[EUR][1000 genomes]
rs4012668	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41301107	0.90[EUR][1000 genomes]
rs4838361	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4838362	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4838364	0.92[EUR][1000 genomes]
rs4838368	0.87[EUR][1000 genomes]
rs4838440	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4838445	0.92[EUR][1000 genomes]
rs4838459	0.90[EUR][1000 genomes]
rs56192862	0.85[EUR][1000 genomes]
rs57328384	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58487442	0.90[EUR][1000 genomes]
rs59461690	0.85[EUR][1000 genomes]
rs61167870	0.92[EUR][1000 genomes]
rs61848150	0.87[EUR][1000 genomes]
rs61848154	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848421	0.92[EUR][1000 genomes]
rs61848427	0.87[EUR][1000 genomes]
rs61848428	0.87[EUR][1000 genomes]
rs61848429	0.87[EUR][1000 genomes]
rs61848430	0.87[EUR][1000 genomes]
rs61848432	0.85[EUR][1000 genomes]
rs61848455	0.81[EUR][1000 genomes]
rs61850676	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6537495	0.92[EUR][1000 genomes]
rs6537500	0.85[EUR][1000 genomes]
rs7069441	0.92[EUR][1000 genomes]
rs7070829	0.87[EUR][1000 genomes]
rs7078930	0.87[EUR][1000 genomes]
rs7080670	0.92[EUR][1000 genomes]
rs7094220	0.92[EUR][1000 genomes]
rs7096516	0.92[EUR][1000 genomes]
rs7101339	0.92[EUR][1000 genomes]
rs72783159	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72785049	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7393292	0.92[EUR][1000 genomes]
rs7897563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7899437	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7902240	0.81[EUR][1000 genomes]
rs7905794	0.84[EUR][1000 genomes]
rs7915922	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
3	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:50232800-50255400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:50233800-50261400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:50233800-50261400	Weak transcription	Spleen	Spleen
9	chr10:50234000-50249000	Strong transcription	Fetal Muscle Leg	muscle
10	chr10:50234000-50254200	Weak transcription	Left Ventricle	heart
11	chr10:50237600-50248800	Weak transcription	Liver	Liver
12	chr10:50241600-50263200	Weak transcription	NHLF	lung
13	chr10:50242400-50258000	Weak transcription	Fetal Kidney	kidney
14	chr10:50242400-50259200	Weak transcription	Brain Substantia Nigra	brain
15	chr10:50243400-50261200	Weak transcription	Lung	lung
16	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:50245400-50258200	Weak transcription	Osteobl	bone
18	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:50245800-50257800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:50247000-50249000	Strong transcription	Fetal Stomach	stomach
21	chr10:50247000-50259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
23	chr10:50247200-50253800	Weak transcription	Adipose Nuclei	Adipose
24	chr10:50247600-50250200	Weak transcription	HSMMtube	muscle
25	chr10:50247800-50250000	Weak transcription	Fetal Lung	lung
26	chr10:50247800-50253600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:50247800-50255000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
29	chr10:50248000-50250400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:50248000-50255000	Weak transcription	Right Ventricle	heart
31	chr10:50248200-50250000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:50248200-50250400	Weak transcription	Aorta	Aorta
33	chr10:50248200-50251200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr10:50248200-50253400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:50248400-50250000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:50248400-50250400	Weak transcription	Ovary	ovary

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