Variant report

Variant	rs2137919
Chromosome Location	chr10:50229538-50229539
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50225099..50226712-chr10:50226883..50229735,2	K562	blood:
2	chr10:50229481..50231907-chr10:50238016..50240371,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10218854	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11101534	1.00[CHB][hapmap]
rs11101559	1.00[CHB][hapmap]
rs12248178	1.00[CHB][hapmap]
rs12254529	1.00[CHB][hapmap]
rs12761826	1.00[CHB][hapmap]
rs12761986	1.00[CHB][hapmap]
rs12762875	1.00[CHB][hapmap]
rs12763066	1.00[CHB][hapmap]
rs12763669	1.00[CHB][hapmap]
rs12766490	1.00[CHB][hapmap]
rs12766824	1.00[CHB][hapmap]
rs12767215	1.00[CHB][hapmap]
rs12769105	1.00[CHB][hapmap]
rs12769580	1.00[CHB][hapmap]
rs12773666	1.00[CHB][hapmap]
rs12774147	1.00[CHB][hapmap]
rs12777007	1.00[CHB][hapmap]
rs12777759	1.00[CHB][hapmap]
rs12779799	1.00[CHB][hapmap]
rs17011329	1.00[CHB][hapmap]
rs17011351	1.00[CHB][hapmap]
rs17011373	1.00[CHB][hapmap]
rs17011404	1.00[CHB][hapmap]
rs17011418	1.00[CHB][hapmap]
rs17011437	1.00[CHB][hapmap]
rs17011603	0.92[EUR][1000 genomes]
rs17011698	0.97[EUR][1000 genomes]
rs17011795	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17011910	0.85[EUR][1000 genomes]
rs17699605	1.00[CHB][hapmap]
rs17700453	0.95[EUR][1000 genomes]
rs17772255	1.00[CHB][hapmap]
rs17772611	1.00[CHB][hapmap]
rs1913524	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2137915	1.00[CHB][hapmap]
rs2137916	1.00[CHB][hapmap]
rs2137918	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2244085	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2244704	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2254632	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2466749	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2466750	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34822196	1.00[CHB][hapmap]
rs3849148	1.00[CHB][hapmap]
rs3849149	1.00[CHB][hapmap]
rs3849150	1.00[CHB][hapmap]
rs4012668	1.00[EUR][1000 genomes]
rs4089536	1.00[CHB][hapmap]
rs41301107	0.87[EUR][1000 genomes]
rs4838361	0.92[EUR][1000 genomes]
rs4838362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs4838364	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4838369	1.00[CHB][hapmap]
rs4838440	0.95[EUR][1000 genomes]
rs4838445	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838457	1.00[CHB][hapmap]
rs4838459	0.87[EUR][1000 genomes]
rs56192862	0.83[EUR][1000 genomes]
rs57328384	0.97[EUR][1000 genomes]
rs58487442	0.92[EUR][1000 genomes]
rs59461690	0.83[EUR][1000 genomes]
rs61167870	0.89[EUR][1000 genomes]
rs61848150	0.89[EUR][1000 genomes]
rs61848154	1.00[EUR][1000 genomes]
rs61848421	0.89[EUR][1000 genomes]
rs61848427	0.85[EUR][1000 genomes]
rs61848428	0.85[EUR][1000 genomes]
rs61848429	0.85[EUR][1000 genomes]
rs61848430	0.85[EUR][1000 genomes]
rs61848432	0.83[EUR][1000 genomes]
rs61850676	1.00[EUR][1000 genomes]
rs61850680	0.97[EUR][1000 genomes]
rs6537495	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6537500	0.83[EUR][1000 genomes]
rs7069441	0.90[EUR][1000 genomes]
rs7070829	0.85[EUR][1000 genomes]
rs7078930	0.85[EUR][1000 genomes]
rs7080670	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7094220	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7096516	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7101339	0.90[EUR][1000 genomes]
rs72783159	1.00[EUR][1000 genomes]
rs72785049	0.92[EUR][1000 genomes]
rs7393292	0.89[EUR][1000 genomes]
rs7897563	0.97[EUR][1000 genomes]
rs7899437	0.92[EUR][1000 genomes]
rs7905794	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7909543	1.00[CHB][hapmap]
rs7915922	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50217400-50231200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:50218600-50238200	Weak transcription	Esophagus	oesophagus
3	chr10:50218800-50231400	Weak transcription	Adipose Nuclei	Adipose
4	chr10:50220400-50233600	Weak transcription	Gastric	stomach
5	chr10:50220800-50231200	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:50221000-50233400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:50221800-50231400	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:50221800-50232400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:50222000-50231400	Weak transcription	Right Ventricle	heart
10	chr10:50222000-50233800	Weak transcription	Lung	lung
11	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:50223000-50231600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:50223000-50231600	Weak transcription	Left Ventricle	heart
14	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
15	chr10:50224200-50231600	Weak transcription	Fetal Kidney	kidney
16	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
17	chr10:50224600-50244800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:50225800-50231200	Weak transcription	Brain Substantia Nigra	brain
19	chr10:50227200-50231400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:50227200-50231400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:50227200-50231600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:50227200-50231600	Weak transcription	Placenta	Placenta
23	chr10:50227400-50231400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:50227800-50231200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:50227800-50231200	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:50227800-50231200	Weak transcription	Fetal Stomach	stomach
27	chr10:50227800-50231400	Weak transcription	Ovary	ovary
28	chr10:50227800-50231600	Weak transcription	Fetal Intestine Small	intestine
29	chr10:50227800-50231600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:50227800-50232400	Weak transcription	Aorta	Aorta
31	chr10:50227800-50237400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:50227800-50238800	Weak transcription	HSMMtube	muscle
33	chr10:50227800-50243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:50228000-50230800	Weak transcription	Fetal Lung	lung
35	chr10:50228000-50231600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:50229000-50231600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:50229200-50229600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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