Variant report

Variant	rs7080670
Chromosome Location	chr10:50302956-50302957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10218854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101001	1.00[CHB][hapmap]
rs11592975	0.82[CHB][hapmap]
rs12243870	0.80[YRI][hapmap]
rs17011603	0.82[EUR][1000 genomes]
rs17011698	0.92[EUR][1000 genomes]
rs17011795	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17011910	0.90[EUR][1000 genomes]
rs17176211	0.81[JPT][hapmap]
rs17700453	0.85[EUR][1000 genomes]
rs1913524	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2137918	0.85[EUR][1000 genomes]
rs2137919	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2244085	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2244704	1.00[CEU][hapmap]
rs2246796	0.82[CHB][hapmap]
rs2254632	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2377982	0.82[CHB][hapmap]
rs2377983	0.82[CHB][hapmap]
rs2466749	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2466750	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3750744	0.82[CHB][hapmap]
rs4012668	0.90[EUR][1000 genomes]
rs41301107	0.92[EUR][1000 genomes]
rs4272720	0.82[CHB][hapmap]
rs4838361	0.82[EUR][1000 genomes]
rs4838362	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838368	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838440	0.85[EUR][1000 genomes]
rs4838445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838458	0.82[CHB][hapmap]
rs4838459	0.92[EUR][1000 genomes]
rs56192862	0.88[EUR][1000 genomes]
rs57328384	0.92[EUR][1000 genomes]
rs58487442	0.82[EUR][1000 genomes]
rs59461690	0.88[EUR][1000 genomes]
rs61167870	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848154	0.90[EUR][1000 genomes]
rs61848421	0.95[EUR][1000 genomes]
rs61848427	0.90[EUR][1000 genomes]
rs61848428	0.90[EUR][1000 genomes]
rs61848429	0.90[EUR][1000 genomes]
rs61848430	0.90[EUR][1000 genomes]
rs61848432	0.88[EUR][1000 genomes]
rs61848455	0.83[EUR][1000 genomes]
rs61850676	0.90[EUR][1000 genomes]
rs61850680	0.92[EUR][1000 genomes]
rs6537495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537500	0.88[EUR][1000 genomes]
rs7069441	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7070829	0.90[EUR][1000 genomes]
rs7078930	0.90[EUR][1000 genomes]
rs7094220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783159	0.90[EUR][1000 genomes]
rs72785049	0.97[EUR][1000 genomes]
rs7393292	0.95[EUR][1000 genomes]
rs7897563	0.92[EUR][1000 genomes]
rs7899437	0.82[EUR][1000 genomes]
rs7899524	0.89[YRI][hapmap]
rs7902240	0.83[EUR][1000 genomes]
rs7905794	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7915922	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924204	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
3	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:50295800-50311600	Weak transcription	K562	blood
5	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
6	chr10:50297600-50303800	Genic enhancers	Fetal Muscle Trunk	muscle
7	chr10:50298600-50306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
10	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
11	chr10:50298800-50304200	Weak transcription	Fetal Heart	heart
12	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
13	chr10:50299200-50303000	Weak transcription	Esophagus	oesophagus
14	chr10:50299200-50303200	Weak transcription	Psoas Muscle	Psoas
15	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
16	chr10:50299400-50303600	Weak transcription	Lung	lung
17	chr10:50299600-50307400	Strong transcription	Fetal Stomach	stomach
18	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
20	chr10:50300800-50312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:50301600-50305400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:50302200-50303400	Enhancers	Brain Substantia Nigra	brain
24	chr10:50302200-50303800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:50302200-50304000	Enhancers	Left Ventricle	heart
26	chr10:50302200-50304000	Enhancers	Right Atrium	heart
27	chr10:50302200-50304000	Enhancers	NHLF	lung
28	chr10:50302200-50304400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:50302200-50304600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:50302400-50303000	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:50302400-50303600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:50302400-50303600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:50302400-50305200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:50302400-50306000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:50302600-50303000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:50302600-50303200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:50302600-50303200	Weak transcription	Brain Anterior Caudate	brain
38	chr10:50302600-50303200	Enhancers	Brain Germinal Matrix	brain
39	chr10:50302600-50303200	Enhancers	Brain Hippocampus Middle	brain
40	chr10:50302600-50303800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:50302600-50304000	Enhancers	Brain Angular Gyrus	brain
42	chr10:50302800-50303000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:50302800-50303200	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr10:50302800-50303200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr10:50302800-50303800	Genic enhancers	Ovary	ovary
46	chr10:50302800-50304000	Enhancers	Right Ventricle	heart

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