Variant report

Variant	rs4838361
Chromosome Location	chr10:50213714-50213715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10218854	0.82[EUR][1000 genomes]
rs17011603	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011698	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011795	0.84[EUR][1000 genomes]
rs17700453	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1913524	0.97[EUR][1000 genomes]
rs2137918	0.97[EUR][1000 genomes]
rs2137919	0.92[EUR][1000 genomes]
rs2244085	0.92[EUR][1000 genomes]
rs2244704	0.90[EUR][1000 genomes]
rs2254632	0.92[EUR][1000 genomes]
rs2466749	0.92[EUR][1000 genomes]
rs2466750	0.92[EUR][1000 genomes]
rs4012668	0.92[EUR][1000 genomes]
rs4838362	0.92[EUR][1000 genomes]
rs4838364	0.82[EUR][1000 genomes]
rs4838440	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4838445	0.82[EUR][1000 genomes]
rs57328384	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58487442	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61167870	0.82[EUR][1000 genomes]
rs61848150	0.97[EUR][1000 genomes]
rs61848154	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61848421	0.82[EUR][1000 genomes]
rs61850676	0.92[EUR][1000 genomes]
rs61850680	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6537495	0.82[EUR][1000 genomes]
rs7069441	0.82[EUR][1000 genomes]
rs7080670	0.82[EUR][1000 genomes]
rs7094220	0.82[EUR][1000 genomes]
rs7096516	0.82[EUR][1000 genomes]
rs7101339	0.82[EUR][1000 genomes]
rs72783159	0.92[EUR][1000 genomes]
rs72785049	0.84[EUR][1000 genomes]
rs7393292	0.82[EUR][1000 genomes]
rs7897563	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7899437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915922	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50210200-50215200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:50210800-50215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:50210800-50216000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:50210800-50216000	Weak transcription	Right Atrium	heart
5	chr10:50210800-50216000	Weak transcription	Right Ventricle	heart
6	chr10:50210800-50219800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:50210800-50223600	Weak transcription	Spleen	Spleen
8	chr10:50211000-50216200	Weak transcription	Fetal Intestine Large	intestine
9	chr10:50211200-50216200	Weak transcription	Fetal Intestine Small	intestine
10	chr10:50213000-50213800	Enhancers	Fetal Lung	lung
11	chr10:50213400-50213800	Enhancers	Adipose Nuclei	Adipose
12	chr10:50213400-50223000	Enhancers	Ovary	ovary
13	chr10:50213600-50215400	Weak transcription	Psoas Muscle	Psoas

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