Variant report

Variant	rs7094220
Chromosome Location	chr10:50298881-50298882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50298074..50299624-chr10:50316267..50318551,2	K562	blood:
2	chr10:50288196..50290467-chr10:50297375..50300354,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10218854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101001	1.00[CHB][hapmap]
rs11592975	0.82[CHB][hapmap]
rs17011603	0.82[EUR][1000 genomes]
rs17011698	0.92[EUR][1000 genomes]
rs17011795	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17011910	0.90[EUR][1000 genomes]
rs17176211	0.81[JPT][hapmap]
rs17700453	0.85[EUR][1000 genomes]
rs1913524	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2137918	0.85[EUR][1000 genomes]
rs2137919	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2244085	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2244704	1.00[CEU][hapmap]
rs2246796	0.82[CHB][hapmap]
rs2254632	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2377982	0.82[CHB][hapmap]
rs2377983	0.82[CHB][hapmap]
rs2466749	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2466750	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3750744	0.82[CHB][hapmap]
rs4012668	0.90[EUR][1000 genomes]
rs41301107	0.92[EUR][1000 genomes]
rs4272720	0.82[CHB][hapmap]
rs4838361	0.82[EUR][1000 genomes]
rs4838362	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838368	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838440	0.85[EUR][1000 genomes]
rs4838445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838458	0.82[CHB][hapmap]
rs4838459	0.92[EUR][1000 genomes]
rs56192862	0.88[EUR][1000 genomes]
rs56737365	0.83[AFR][1000 genomes]
rs57328384	0.92[EUR][1000 genomes]
rs58487442	0.82[EUR][1000 genomes]
rs59461690	0.88[EUR][1000 genomes]
rs61167870	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848154	0.90[EUR][1000 genomes]
rs61848421	0.95[EUR][1000 genomes]
rs61848427	0.90[EUR][1000 genomes]
rs61848428	0.90[EUR][1000 genomes]
rs61848429	0.90[EUR][1000 genomes]
rs61848430	0.90[EUR][1000 genomes]
rs61848432	0.88[EUR][1000 genomes]
rs61848455	0.83[EUR][1000 genomes]
rs61850676	0.90[EUR][1000 genomes]
rs61850680	0.92[EUR][1000 genomes]
rs6537495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537500	0.88[EUR][1000 genomes]
rs7069441	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7070829	0.90[EUR][1000 genomes]
rs7078930	0.90[EUR][1000 genomes]
rs7080670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101339	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783159	0.90[EUR][1000 genomes]
rs72785049	0.97[EUR][1000 genomes]
rs73302715	0.82[AFR][1000 genomes]
rs73302716	0.83[AFR][1000 genomes]
rs7393292	0.95[EUR][1000 genomes]
rs7897563	0.92[EUR][1000 genomes]
rs7899437	0.82[EUR][1000 genomes]
rs7899524	0.85[YRI][hapmap]
rs7902240	0.83[EUR][1000 genomes]
rs7905794	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7915922	0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924204	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50291800-50299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
5	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:50294800-50302600	Weak transcription	Brain Angular Gyrus	brain
7	chr10:50295800-50311600	Weak transcription	K562	blood
8	chr10:50296400-50300200	Enhancers	Right Atrium	heart
9	chr10:50296400-50302200	Enhancers	Right Ventricle	heart
10	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
11	chr10:50296600-50299000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:50296600-50299200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:50296600-50299400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:50296600-50299400	Enhancers	Left Ventricle	heart
15	chr10:50296800-50301000	Enhancers	Ovary	ovary
16	chr10:50297000-50299000	Enhancers	Fetal Lung	lung
17	chr10:50297000-50300800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:50297200-50299000	Enhancers	Colon Smooth Muscle	Colon
19	chr10:50297200-50299400	Enhancers	Lung	lung
20	chr10:50297200-50299600	Genic enhancers	Fetal Stomach	stomach
21	chr10:50297400-50299600	Enhancers	Adipose Nuclei	Adipose
22	chr10:50297600-50299400	Enhancers	Placenta	Placenta
23	chr10:50297600-50302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:50297600-50303800	Genic enhancers	Fetal Muscle Trunk	muscle
25	chr10:50297800-50299000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr10:50298000-50299200	Enhancers	Psoas Muscle	Psoas
27	chr10:50298000-50299400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:50298200-50299200	Enhancers	Spleen	Spleen
29	chr10:50298200-50299400	Enhancers	Colonic Mucosa	Colon
30	chr10:50298400-50299000	Weak transcription	Fetal Kidney	kidney
31	chr10:50298400-50299200	Enhancers	Esophagus	oesophagus
32	chr10:50298400-50299200	Enhancers	Pancreas	Pancrea
33	chr10:50298400-50302400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:50298600-50299000	Flanking Active TSS	HSMMtube	muscle
35	chr10:50298600-50299000	Enhancers	NHLF	lung
36	chr10:50298600-50302200	Weak transcription	Brain Substantia Nigra	brain
37	chr10:50298600-50302400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:50298600-50306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
41	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
42	chr10:50298800-50299400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:50298800-50299600	Enhancers	Fetal Thymus	thymus
44	chr10:50298800-50300000	Enhancers	Stomach Smooth Muscle	stomach
45	chr10:50298800-50302600	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:50298800-50304200	Weak transcription	Fetal Heart	heart

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