Variant report

Variant	rs6537495
Chromosome Location	chr10:50300505-50300506
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10218854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101001	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11592975	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs17011603	0.82[EUR][1000 genomes]
rs17011698	0.92[EUR][1000 genomes]
rs17011795	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs17011910	0.90[EUR][1000 genomes]
rs17700453	0.85[EUR][1000 genomes]
rs17782866	0.82[CHB][hapmap]
rs1913524	1.00[CEU][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs2137918	0.85[EUR][1000 genomes]
rs2137919	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2244085	1.00[CEU][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs2244704	1.00[CEU][hapmap]
rs2246796	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs2254632	1.00[CEU][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs2377982	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs2377983	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs2466749	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2466750	1.00[CEU][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs3750744	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs4012668	0.90[EUR][1000 genomes]
rs41301107	0.92[EUR][1000 genomes]
rs4272720	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs4284329	0.82[CHB][hapmap]
rs4838361	0.82[EUR][1000 genomes]
rs4838362	1.00[CEU][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs4838364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838368	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838440	0.85[EUR][1000 genomes]
rs4838445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838458	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs4838459	0.92[EUR][1000 genomes]
rs56192862	0.88[EUR][1000 genomes]
rs56737365	0.80[AFR][1000 genomes]
rs57328384	0.92[EUR][1000 genomes]
rs58487442	0.82[EUR][1000 genomes]
rs59461690	0.88[EUR][1000 genomes]
rs61167870	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848154	0.90[EUR][1000 genomes]
rs61848421	0.95[EUR][1000 genomes]
rs61848427	0.90[EUR][1000 genomes]
rs61848428	0.90[EUR][1000 genomes]
rs61848429	0.90[EUR][1000 genomes]
rs61848430	0.90[EUR][1000 genomes]
rs61848432	0.88[EUR][1000 genomes]
rs61848455	0.83[EUR][1000 genomes]
rs61850676	0.90[EUR][1000 genomes]
rs61850680	0.92[EUR][1000 genomes]
rs6537500	0.88[EUR][1000 genomes]
rs7069441	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7070829	0.90[EUR][1000 genomes]
rs7078930	0.90[EUR][1000 genomes]
rs7080670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101339	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783159	0.90[EUR][1000 genomes]
rs72785049	0.97[EUR][1000 genomes]
rs73302716	0.80[AFR][1000 genomes]
rs7393292	0.95[EUR][1000 genomes]
rs7897563	0.92[EUR][1000 genomes]
rs7899437	0.82[EUR][1000 genomes]
rs7899524	0.80[ASW][hapmap];0.85[MEX][hapmap];0.89[YRI][hapmap]
rs7902240	0.83[EUR][1000 genomes]
rs7905794	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7915922	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924204	0.82[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
4	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:50294800-50302600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:50295800-50311600	Weak transcription	K562	blood
7	chr10:50296400-50302200	Enhancers	Right Ventricle	heart
8	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
9	chr10:50296800-50301000	Enhancers	Ovary	ovary
10	chr10:50297000-50300800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:50297600-50302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:50297600-50303800	Genic enhancers	Fetal Muscle Trunk	muscle
13	chr10:50298400-50302400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:50298600-50302200	Weak transcription	Brain Substantia Nigra	brain
15	chr10:50298600-50302400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:50298600-50306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
19	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
20	chr10:50298800-50302600	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:50298800-50304200	Weak transcription	Fetal Heart	heart
22	chr10:50299000-50302200	Weak transcription	NHLF	lung
23	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
24	chr10:50299200-50301600	Weak transcription	Fetal Kidney	kidney
25	chr10:50299200-50303000	Weak transcription	Esophagus	oesophagus
26	chr10:50299200-50303200	Weak transcription	Psoas Muscle	Psoas
27	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
28	chr10:50299400-50300600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:50299400-50300600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:50299400-50300600	Weak transcription	Left Ventricle	heart
31	chr10:50299400-50303600	Weak transcription	Lung	lung
32	chr10:50299600-50307400	Strong transcription	Fetal Stomach	stomach
33	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
34	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
35	chr10:50300000-50301000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:50300200-50302200	Weak transcription	Right Atrium	heart
37	chr10:50300200-50302400	Weak transcription	Adipose Nuclei	Adipose
38	chr10:50300400-50300800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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