Variant report

Variant	rs61848428
Chromosome Location	chr10:50337403-50337404
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50331517..50334142-chr10:50335881..50337870,2	K562	blood:
2	chr10:50336001..50338824-chr10:50401214..50403716,2	K562	blood:
3	chr10:50323173..50324677-chr10:50336521..50339264,2	K562	blood:
4	chr10:50331517..50334584-chr10:50334823..50337870,3	K562	blood:

Variant related genes	Relation type
ENSG00000165633	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10218854	0.90[EUR][1000 genomes]
rs17011698	0.87[EUR][1000 genomes]
rs17011795	0.92[EUR][1000 genomes]
rs17011910	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700453	0.80[EUR][1000 genomes]
rs1913524	0.80[EUR][1000 genomes]
rs2137918	0.80[EUR][1000 genomes]
rs2137919	0.85[EUR][1000 genomes]
rs2244085	0.85[EUR][1000 genomes]
rs2254632	0.85[EUR][1000 genomes]
rs2466749	0.85[EUR][1000 genomes]
rs2466750	0.85[EUR][1000 genomes]
rs4012668	0.85[EUR][1000 genomes]
rs41301107	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4838362	0.85[EUR][1000 genomes]
rs4838364	0.90[EUR][1000 genomes]
rs4838368	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838440	0.80[EUR][1000 genomes]
rs4838445	0.90[EUR][1000 genomes]
rs4838459	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56192862	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57328384	0.87[EUR][1000 genomes]
rs58473966	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs59461690	0.88[EUR][1000 genomes]
rs61167870	0.95[EUR][1000 genomes]
rs61848154	0.85[EUR][1000 genomes]
rs61848421	0.95[EUR][1000 genomes]
rs61848427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848429	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848430	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848455	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61850676	0.85[EUR][1000 genomes]
rs61850680	0.87[EUR][1000 genomes]
rs6537495	0.90[EUR][1000 genomes]
rs6537500	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7069441	0.90[EUR][1000 genomes]
rs7070829	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7078930	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080670	0.90[EUR][1000 genomes]
rs7085702	0.83[EUR][1000 genomes]
rs7094220	0.90[EUR][1000 genomes]
rs7096516	0.90[EUR][1000 genomes]
rs7101339	0.90[EUR][1000 genomes]
rs72783159	0.85[EUR][1000 genomes]
rs72785049	0.92[EUR][1000 genomes]
rs7393292	0.95[EUR][1000 genomes]
rs7897563	0.87[EUR][1000 genomes]
rs7902240	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7905794	0.81[EUR][1000 genomes]
rs7914194	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7915922	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:50325000-50339400	Weak transcription	Ovary	ovary
4	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
5	chr10:50336600-50341800	Weak transcription	Fetal Thymus	thymus

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