Variant report

Variant	rs58473966
Chromosome Location	chr10:50361309-50361310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17011910	0.83[EUR][1000 genomes]
rs41301107	0.81[EUR][1000 genomes]
rs4838368	0.83[EUR][1000 genomes]
rs4838459	0.81[EUR][1000 genomes]
rs56192862	0.85[EUR][1000 genomes]
rs59461690	0.85[EUR][1000 genomes]
rs61848427	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61848428	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61848429	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61848430	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61848432	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61848455	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6537500	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7070829	0.83[EUR][1000 genomes]
rs7078930	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7085702	0.81[EUR][1000 genomes]
rs72785093	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7902240	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7914194	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50354400-50362000	Weak transcription	K562	blood
2	chr10:50358400-50361600	Weak transcription	HSMMtube	muscle
3	chr10:50358600-50361400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:50358800-50362000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
6	chr10:50359200-50362000	Weak transcription	HSMM	muscle
7	chr10:50359200-50363600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
9	chr10:50359400-50361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:50359400-50364600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:50359400-50365200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
13	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:50359600-50362600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:50359600-50364600	Weak transcription	Fetal Thymus	thymus
16	chr10:50359800-50361400	Weak transcription	NHDF-Ad	bronchial
17	chr10:50360000-50361400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links