Variant report

Variant	rs7070829
Chromosome Location	chr10:50330887-50330888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10218854	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17011698	0.87[EUR][1000 genomes]
rs17011795	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17011910	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700453	0.80[EUR][1000 genomes]
rs1913524	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2137918	0.80[EUR][1000 genomes]
rs2137919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs2244085	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2244704	1.00[CEU][hapmap]
rs2254632	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2466749	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2466750	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4012668	0.85[EUR][1000 genomes]
rs41301107	0.92[EUR][1000 genomes]
rs4838362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4838364	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838369	1.00[CHB][hapmap]
rs4838440	0.80[EUR][1000 genomes]
rs4838445	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838457	1.00[CHB][hapmap]
rs4838459	0.92[EUR][1000 genomes]
rs56192862	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57328384	0.87[EUR][1000 genomes]
rs58473966	0.83[EUR][1000 genomes]
rs59461690	0.88[EUR][1000 genomes]
rs61167870	0.95[EUR][1000 genomes]
rs61848154	0.85[EUR][1000 genomes]
rs61848421	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848427	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848428	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848429	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848430	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848432	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848455	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61850676	0.85[EUR][1000 genomes]
rs61850680	0.87[EUR][1000 genomes]
rs6537495	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6537500	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7069441	0.90[EUR][1000 genomes]
rs7078930	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080670	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7085702	0.83[EUR][1000 genomes]
rs7094220	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7096516	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7101339	0.90[EUR][1000 genomes]
rs72783159	0.85[EUR][1000 genomes]
rs72785049	0.92[EUR][1000 genomes]
rs7393292	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7897563	0.87[EUR][1000 genomes]
rs7902240	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7905794	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7914194	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7915922	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	esv1818143	chr10:50323229-50332930	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:50325000-50339400	Weak transcription	Ovary	ovary
4	chr10:50329000-50331800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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