Variant report

Variant	rs4838459
Chromosome Location	chr10:50349967-50349968
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50345704..50347282-chr10:50347596..50350389,2	K562	blood:
2	chr10:50349765..50352493-chr10:50363448..50365064,2	K562	blood:
3	chr10:50349435..50351722-chr10:50368271..50370648,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10218854	0.92[EUR][1000 genomes]
rs17011698	0.90[EUR][1000 genomes]
rs17011795	0.95[EUR][1000 genomes]
rs17011910	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17700453	0.82[EUR][1000 genomes]
rs1913524	0.82[EUR][1000 genomes]
rs2137918	0.82[EUR][1000 genomes]
rs2137919	0.87[EUR][1000 genomes]
rs2244085	0.87[EUR][1000 genomes]
rs2254632	0.87[EUR][1000 genomes]
rs2466749	0.87[EUR][1000 genomes]
rs2466750	0.87[EUR][1000 genomes]
rs4012668	0.87[EUR][1000 genomes]
rs41301107	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838362	0.87[EUR][1000 genomes]
rs4838364	0.92[EUR][1000 genomes]
rs4838368	0.92[EUR][1000 genomes]
rs4838440	0.82[EUR][1000 genomes]
rs4838445	0.92[EUR][1000 genomes]
rs56192862	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57328384	0.90[EUR][1000 genomes]
rs58473966	0.81[EUR][1000 genomes]
rs59461690	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61167870	0.97[EUR][1000 genomes]
rs61848154	0.87[EUR][1000 genomes]
rs61848421	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848427	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61848428	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61848429	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61848430	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61848432	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848455	0.90[EUR][1000 genomes]
rs61850676	0.87[EUR][1000 genomes]
rs61850680	0.90[EUR][1000 genomes]
rs6537495	0.92[EUR][1000 genomes]
rs6537500	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7069441	0.92[EUR][1000 genomes]
rs7070829	0.92[EUR][1000 genomes]
rs7078930	0.92[EUR][1000 genomes]
rs7080670	0.92[EUR][1000 genomes]
rs7085702	0.81[EUR][1000 genomes]
rs7094220	0.92[EUR][1000 genomes]
rs7096516	0.92[EUR][1000 genomes]
rs7101339	0.92[EUR][1000 genomes]
rs72783159	0.87[EUR][1000 genomes]
rs72785049	0.95[EUR][1000 genomes]
rs7393292	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7897563	0.90[EUR][1000 genomes]
rs7902240	0.90[EUR][1000 genomes]
rs7905794	0.84[EUR][1000 genomes]
rs7914194	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7915922	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:50344200-50352200	Weak transcription	Fetal Thymus	thymus
3	chr10:50346200-50354400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:50346600-50350600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:50346800-50351800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:50347800-50351200	Enhancers	NHDF-Ad	bronchial
7	chr10:50348000-50351200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:50348000-50352200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:50348800-50352200	Weak transcription	Right Atrium	heart
10	chr10:50349000-50350400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:50349000-50351400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:50349000-50352000	Weak transcription	Adipose Nuclei	Adipose
13	chr10:50349000-50352000	Weak transcription	Left Ventricle	heart
14	chr10:50349000-50352200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:50349600-50350400	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:50349600-50352000	Weak transcription	Ovary	ovary
17	chr10:50349600-50357200	Weak transcription	HSMM	muscle
18	chr10:50349800-50351400	Weak transcription	Fetal Lung	lung
19	chr10:50349800-50351400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:50349800-50351400	Weak transcription	Placenta	Placenta
21	chr10:50349800-50352000	Weak transcription	NHLF	lung
22	chr10:50349800-50354000	Weak transcription	K562	blood

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