Variant report

Variant	rs2244085
Chromosome Location	chr10:50232180-50232181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10218854	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10735227	1.00[CHB][hapmap]
rs10745288	1.00[CHB][hapmap]
rs10745289	1.00[CHB][hapmap]
rs10776655	1.00[CHB][hapmap]
rs10776656	1.00[CHB][hapmap]
rs10857659	1.00[CHB][hapmap]
rs1317894	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17011603	0.92[EUR][1000 genomes]
rs17011698	0.97[EUR][1000 genomes]
rs17011795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17011910	0.85[EUR][1000 genomes]
rs17700453	0.95[EUR][1000 genomes]
rs1913524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137918	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137919	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2137921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2244704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244777	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2252692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2254632	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2377632	1.00[CHB][hapmap]
rs2377649	1.00[CHB][hapmap]
rs2377694	1.00[CHB][hapmap]
rs2458674	1.00[CHB][hapmap]
rs2466749	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466750	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2663024	1.00[CHB][hapmap]
rs2663027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663058	1.00[CHB][hapmap]
rs2663061	1.00[CHB][hapmap]
rs2663062	1.00[CHB][hapmap]
rs2671690	0.91[ASN][1000 genomes]
rs2671698	1.00[CHB][hapmap]
rs2671699	1.00[CHB][hapmap]
rs2671700	1.00[CHB][hapmap]
rs2671701	1.00[CHB][hapmap]
rs2889691	1.00[CHB][hapmap]
rs2943248	1.00[CHB][hapmap]
rs3750866	1.00[CHB][hapmap]
rs3810953	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3849151	1.00[CHB][hapmap]
rs3849152	1.00[CHB][hapmap]
rs4012668	1.00[EUR][1000 genomes]
rs41301107	0.87[EUR][1000 genomes]
rs4838361	0.92[EUR][1000 genomes]
rs4838362	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4838364	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4838368	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4838440	0.95[EUR][1000 genomes]
rs4838445	1.00[CEU][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs4838459	0.87[EUR][1000 genomes]
rs4838663	1.00[JPT][hapmap]
rs56192862	0.83[EUR][1000 genomes]
rs57328384	0.97[EUR][1000 genomes]
rs57406661	0.83[ASN][1000 genomes]
rs58144692	0.91[ASN][1000 genomes]
rs58487442	0.92[EUR][1000 genomes]
rs59461690	0.83[EUR][1000 genomes]
rs60312033	0.83[ASN][1000 genomes]
rs61167870	0.89[EUR][1000 genomes]
rs61848150	0.89[EUR][1000 genomes]
rs61848154	1.00[EUR][1000 genomes]
rs61848421	0.89[EUR][1000 genomes]
rs61848427	0.85[EUR][1000 genomes]
rs61848428	0.85[EUR][1000 genomes]
rs61848429	0.85[EUR][1000 genomes]
rs61848430	0.85[EUR][1000 genomes]
rs61848432	0.83[EUR][1000 genomes]
rs61850676	1.00[EUR][1000 genomes]
rs61850680	0.97[EUR][1000 genomes]
rs6537495	1.00[CEU][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs6537500	0.83[EUR][1000 genomes]
rs7069441	0.90[EUR][1000 genomes]
rs7069844	1.00[JPT][hapmap]
rs7070829	0.85[EUR][1000 genomes]
rs7078930	0.85[EUR][1000 genomes]
rs7080003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs7080670	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7090938	0.81[ASN][1000 genomes]
rs7094220	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7094724	1.00[CHB][hapmap]
rs7096516	1.00[CEU][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs7096721	0.81[ASN][1000 genomes]
rs7101339	0.90[EUR][1000 genomes]
rs72783159	1.00[EUR][1000 genomes]
rs72785049	0.92[EUR][1000 genomes]
rs73298906	0.83[ASN][1000 genomes]
rs73298923	0.96[ASN][1000 genomes]
rs7393292	0.89[EUR][1000 genomes]
rs7895063	0.91[ASN][1000 genomes]
rs7897563	0.97[EUR][1000 genomes]
rs7898774	0.81[ASN][1000 genomes]
rs7899437	0.92[EUR][1000 genomes]
rs7899524	1.00[MEX][hapmap]
rs7905794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7911009	1.00[CHB][hapmap]
rs7914464	0.91[ASN][1000 genomes]
rs7915922	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50218600-50238200	Weak transcription	Esophagus	oesophagus
2	chr10:50220400-50233600	Weak transcription	Gastric	stomach
3	chr10:50221000-50233400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:50221800-50232400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:50222000-50233800	Weak transcription	Lung	lung
6	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
8	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:50224600-50244800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:50227800-50232400	Weak transcription	Aorta	Aorta
11	chr10:50227800-50237400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:50227800-50238800	Weak transcription	HSMMtube	muscle
13	chr10:50227800-50243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:50230800-50233400	Enhancers	Fetal Lung	lung
15	chr10:50231200-50232200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:50231200-50232400	Enhancers	Brain Hippocampus Middle	brain
17	chr10:50231200-50232400	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:50231200-50232800	Enhancers	Brain Substantia Nigra	brain
19	chr10:50231200-50232800	Enhancers	Fetal Stomach	stomach
20	chr10:50231400-50232800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:50231400-50232800	Enhancers	Right Ventricle	heart
22	chr10:50231400-50233000	Enhancers	Adipose Nuclei	Adipose
23	chr10:50231400-50233000	Enhancers	Colon Smooth Muscle	Colon
24	chr10:50231400-50233600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:50231400-50233800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:50231400-50234000	Genic enhancers	Fetal Muscle Leg	muscle
27	chr10:50231400-50234400	Enhancers	Ovary	ovary
28	chr10:50231600-50232200	Enhancers	Fetal Kidney	kidney
29	chr10:50231600-50232400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr10:50231600-50232400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr10:50231600-50232600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:50231600-50232600	Enhancers	Psoas Muscle	Psoas
33	chr10:50231600-50233000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:50231600-50233000	Enhancers	Stomach Smooth Muscle	stomach
35	chr10:50231600-50234000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:50231600-50234200	Enhancers	Fetal Intestine Small	intestine
37	chr10:50231800-50232200	Weak transcription	Placenta	Placenta
38	chr10:50231800-50232200	Weak transcription	Left Ventricle	heart
39	chr10:50231800-50232800	Enhancers	Right Atrium	heart
40	chr10:50232000-50232600	Enhancers	Brain Angular Gyrus	brain

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