Variant report

Variant	rs17011603
Chromosome Location	chr10:50219635-50219636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50180497..50182804-chr10:50219120..50221241,2	K562	blood:
2	chr10:50217414..50220289-chr10:50222557..50225109,2	K562	blood:
3	chr10:49899844..49902277-chr10:50218756..50220878,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10218854	0.82[EUR][1000 genomes]
rs17011698	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011795	0.84[EUR][1000 genomes]
rs17700453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1913524	0.97[EUR][1000 genomes]
rs2137918	0.97[EUR][1000 genomes]
rs2137919	0.92[EUR][1000 genomes]
rs2244085	0.92[EUR][1000 genomes]
rs2244704	0.90[EUR][1000 genomes]
rs2254632	0.92[EUR][1000 genomes]
rs2466749	0.92[EUR][1000 genomes]
rs2466750	0.92[EUR][1000 genomes]
rs4012668	0.92[EUR][1000 genomes]
rs4838361	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838362	0.92[EUR][1000 genomes]
rs4838364	0.82[EUR][1000 genomes]
rs4838440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4838445	0.82[EUR][1000 genomes]
rs57328384	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58487442	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61167870	0.82[EUR][1000 genomes]
rs61848150	0.97[EUR][1000 genomes]
rs61848154	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61848421	0.82[EUR][1000 genomes]
rs61850676	0.92[EUR][1000 genomes]
rs61850680	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6537495	0.82[EUR][1000 genomes]
rs7069441	0.82[EUR][1000 genomes]
rs7080670	0.82[EUR][1000 genomes]
rs7094220	0.82[EUR][1000 genomes]
rs7096516	0.82[EUR][1000 genomes]
rs7101339	0.82[EUR][1000 genomes]
rs72783159	0.92[EUR][1000 genomes]
rs72785049	0.84[EUR][1000 genomes]
rs7393292	0.82[EUR][1000 genomes]
rs7897563	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7899437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915922	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50210800-50219800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50210800-50223600	Weak transcription	Spleen	Spleen
3	chr10:50213400-50223000	Enhancers	Ovary	ovary
4	chr10:50215200-50222400	Enhancers	Left Ventricle	heart
5	chr10:50216000-50219800	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:50216000-50219800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:50216200-50220000	Enhancers	Fetal Intestine Large	intestine
8	chr10:50216200-50221800	Enhancers	Fetal Intestine Small	intestine
9	chr10:50216600-50222000	Enhancers	Right Ventricle	heart
10	chr10:50216600-50223000	Enhancers	Placenta	Placenta
11	chr10:50217200-50220600	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:50217200-50226600	Weak transcription	Aorta	Aorta
13	chr10:50217400-50231200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:50217600-50227000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:50218000-50221000	Weak transcription	Fetal Lung	lung
16	chr10:50218600-50220400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:50218600-50223800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:50218600-50225800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:50218600-50238200	Weak transcription	Esophagus	oesophagus
20	chr10:50218800-50220600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr10:50218800-50221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:50218800-50231400	Weak transcription	Adipose Nuclei	Adipose
23	chr10:50219000-50220600	Weak transcription	K562	blood
24	chr10:50219200-50221200	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:50219200-50222200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:50219200-50226600	Weak transcription	HSMMtube	muscle
27	chr10:50219400-50220600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:50219400-50220800	Genic enhancers	Fetal Stomach	stomach
29	chr10:50219400-50221400	Weak transcription	Right Atrium	heart

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