Variant report

Variant	rs7902240
Chromosome Location	chr10:50357938-50357939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50355645..50357503-chr10:50357925..50361172,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10218854	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs17011698	0.81[EUR][1000 genomes]
rs17011795	0.82[CEU][hapmap];0.81[GIH][hapmap];0.86[EUR][1000 genomes]
rs17011910	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1913524	0.82[CEU][hapmap]
rs2137919	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2244085	0.82[CEU][hapmap]
rs2244704	0.82[CEU][hapmap]
rs2254632	0.82[CEU][hapmap]
rs2466749	0.82[CEU][hapmap]
rs2466750	0.82[CEU][hapmap]
rs41301107	0.90[EUR][1000 genomes]
rs4838362	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4838364	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs4838368	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4838369	1.00[CHB][hapmap]
rs4838445	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs4838457	1.00[CHB][hapmap]
rs4838459	0.90[EUR][1000 genomes]
rs56192862	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57328384	0.81[EUR][1000 genomes]
rs58473966	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59461690	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61167870	0.88[EUR][1000 genomes]
rs61848421	0.88[EUR][1000 genomes]
rs61848427	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848428	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848429	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848430	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848432	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61850680	0.81[EUR][1000 genomes]
rs6537495	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs6537500	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7069441	0.83[EUR][1000 genomes]
rs7070829	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7078930	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7080670	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs7085702	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7094220	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs7096516	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs7101339	0.83[EUR][1000 genomes]
rs72785049	0.86[EUR][1000 genomes]
rs72785093	0.85[EUR][1000 genomes]
rs7393292	0.88[EUR][1000 genomes]
rs7897563	0.81[EUR][1000 genomes]
rs7905794	0.82[CEU][hapmap]
rs7914194	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7915922	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50354400-50358000	Weak transcription	NHDF-Ad	bronchial
2	chr10:50354400-50362000	Weak transcription	K562	blood
3	chr10:50356400-50359200	Enhancers	Fetal Stomach	stomach
4	chr10:50356800-50358400	Enhancers	HSMMtube	muscle
5	chr10:50357000-50358000	Enhancers	Fetal Lung	lung
6	chr10:50357000-50359600	Enhancers	Fetal Muscle Leg	muscle
7	chr10:50357200-50358600	Enhancers	HSMM	muscle
8	chr10:50357200-50359000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:50357200-50360000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:50357400-50358600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:50357800-50358000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
12	chr10:50357800-50358400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:50357800-50359400	Enhancers	Fetal Muscle Trunk	muscle

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