Variant report

Variant	rs17011437
Chromosome Location	chr10:50115959-50115960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10857652	0.90[EUR][1000 genomes]
rs10857654	0.88[EUR][1000 genomes]
rs11101534	1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs11101559	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12242220	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs12248178	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs12249626	0.90[EUR][1000 genomes]
rs12254529	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12255772	0.95[EUR][1000 genomes]
rs12262698	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12264297	0.84[EUR][1000 genomes]
rs12269697	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs12761517	0.90[EUR][1000 genomes]
rs12761826	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12761986	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12762875	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12763066	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12763669	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12764790	0.93[EUR][1000 genomes]
rs12765593	0.90[EUR][1000 genomes]
rs12766490	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12766824	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12767215	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12769105	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12769580	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12773666	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12774010	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12774147	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12777007	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12777295	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12777759	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12778556	0.90[EUR][1000 genomes]
rs12779799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12780156	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17011329	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17011351	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs17011373	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17011404	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011418	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699605	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17772255	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17772611	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1904599	1.00[CHB][hapmap]
rs2137915	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2137916	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2137919	1.00[CHB][hapmap]
rs2377650	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2377651	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2889698	0.95[EUR][1000 genomes]
rs34120130	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34430399	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34486070	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34546247	0.97[EUR][1000 genomes]
rs34577893	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34787985	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34822196	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34874893	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35046275	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35051407	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35085842	0.95[EUR][1000 genomes]
rs35193987	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35340770	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35422654	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35423873	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35495091	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35599486	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35741253	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35796772	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35968275	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35986885	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3849148	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs3849149	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3849150	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3897964	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3954099	0.84[EUR][1000 genomes]
rs4089536	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41283291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4838362	1.00[CHB][hapmap]
rs56078611	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61848060	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848068	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848081	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848083	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61850380	0.95[EUR][1000 genomes]
rs7094358	0.90[EUR][1000 genomes]
rs71500255	0.95[EUR][1000 genomes]
rs7909543	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:50104800-50119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:50108400-50126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:50109000-50126000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:50109400-50127800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50110200-50120400	Weak transcription	Primary T cells from cord blood	blood
10	chr10:50111800-50116600	Strong transcription	Primary hematopoietic stem cells	blood
11	chr10:50113400-50118200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50113600-50118200	Weak transcription	Spleen	Spleen
13	chr10:50113600-50118400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:50114000-50120200	Weak transcription	Fetal Stomach	stomach
15	chr10:50114200-50116000	Enhancers	Fetal Muscle Leg	muscle
16	chr10:50114200-50122800	Weak transcription	Lung	lung
17	chr10:50114800-50117000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:50114800-50117600	Weak transcription	Esophagus	oesophagus
19	chr10:50115600-50116400	Genic enhancers	GM12878-XiMat	blood
20	chr10:50115800-50116200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:50115800-50116400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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