Variant report

Variant	rs2889698
Chromosome Location	chr10:50088284-50088285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50086771..50088762-chr10:50090005..50092459,2	K562	blood:
2	chr10:50088152..50090151-chr10:50095487..50098221,3	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10857652	0.91[EUR][1000 genomes]
rs10857654	0.89[EUR][1000 genomes]
rs11101534	0.96[EUR][1000 genomes]
rs12242220	0.91[EUR][1000 genomes]
rs12248178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249626	0.91[EUR][1000 genomes]
rs12254529	1.00[ASN][1000 genomes]
rs12255772	0.96[EUR][1000 genomes]
rs12262698	0.97[EUR][1000 genomes]
rs12264297	0.85[EUR][1000 genomes]
rs12269697	0.91[EUR][1000 genomes]
rs12761517	0.91[EUR][1000 genomes]
rs12761826	0.95[EUR][1000 genomes]
rs12761986	0.95[EUR][1000 genomes]
rs12762875	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12763066	0.95[EUR][1000 genomes]
rs12763669	0.95[EUR][1000 genomes]
rs12764790	0.94[EUR][1000 genomes]
rs12765593	0.91[EUR][1000 genomes]
rs12766490	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12766824	0.94[EUR][1000 genomes]
rs12767215	0.94[EUR][1000 genomes]
rs12769105	0.95[EUR][1000 genomes]
rs12769580	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12773666	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12774010	0.94[EUR][1000 genomes]
rs12774147	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12777007	0.97[EUR][1000 genomes]
rs12777295	0.94[EUR][1000 genomes]
rs12777759	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12778556	0.91[EUR][1000 genomes]
rs12779799	0.95[EUR][1000 genomes]
rs12780156	0.96[EUR][1000 genomes]
rs17011329	0.97[EUR][1000 genomes]
rs17011351	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011373	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17011404	0.95[EUR][1000 genomes]
rs17011418	0.95[EUR][1000 genomes]
rs17011437	0.95[EUR][1000 genomes]
rs17699605	0.98[EUR][1000 genomes]
rs17772255	0.98[EUR][1000 genomes]
rs17772611	0.92[EUR][1000 genomes]
rs2137915	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2137916	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2377650	0.84[EUR][1000 genomes]
rs2377651	0.90[EUR][1000 genomes]
rs34120130	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34430399	0.95[EUR][1000 genomes]
rs34486070	0.94[EUR][1000 genomes]
rs34546247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34577893	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34787985	0.95[EUR][1000 genomes]
rs34822196	0.97[EUR][1000 genomes]
rs34874893	0.95[EUR][1000 genomes]
rs35046275	0.95[EUR][1000 genomes]
rs35051407	0.97[EUR][1000 genomes]
rs35085842	0.96[EUR][1000 genomes]
rs35193987	0.97[EUR][1000 genomes]
rs35340770	0.95[EUR][1000 genomes]
rs35422654	0.95[EUR][1000 genomes]
rs35423873	0.95[EUR][1000 genomes]
rs35495091	0.97[EUR][1000 genomes]
rs35599486	0.95[EUR][1000 genomes]
rs35741253	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35796772	0.95[EUR][1000 genomes]
rs35968275	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35986885	0.93[EUR][1000 genomes]
rs3849148	0.80[EUR][1000 genomes]
rs3849149	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3849150	0.95[EUR][1000 genomes]
rs3897964	0.95[EUR][1000 genomes]
rs3954099	1.00[ASN][1000 genomes]
rs4089536	0.95[EUR][1000 genomes]
rs41283291	0.93[EUR][1000 genomes]
rs61848060	0.96[EUR][1000 genomes]
rs61848068	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61848081	0.95[EUR][1000 genomes]
rs61848083	0.95[EUR][1000 genomes]
rs61850380	0.96[EUR][1000 genomes]
rs7094358	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71500255	0.96[EUR][1000 genomes]
rs7909543	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:50074600-50093200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
5	chr10:50075200-50093600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:50076600-50092000	Weak transcription	Primary T cells from cord blood	blood
8	chr10:50079400-50088400	Strong transcription	GM12878-XiMat	blood
9	chr10:50080200-50088400	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:50081200-50090800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:50081400-50089200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:50081600-50091200	Strong transcription	Spleen	Spleen
13	chr10:50086600-50089000	Enhancers	Brain Germinal Matrix	brain
14	chr10:50086800-50098200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:50087200-50088800	Enhancers	Fetal Brain Male	brain
16	chr10:50087400-50088600	Enhancers	Fetal Brain Female	brain
17	chr10:50087800-50089000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:50087800-50089000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:50088000-50088800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:50088000-50089200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:50088000-50109400	Weak transcription	Right Atrium	heart
22	chr10:50088200-50088600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr10:50088200-50088800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:50088200-50088800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:50088200-50089000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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