Variant report

Variant	rs41280539
Chromosome Location	chr10:50340190-50340191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11100986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100987	1.00[EUR][1000 genomes]
rs17011899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838457	1.00[ASN][1000 genomes]
rs4838462	1.00[ASN][1000 genomes]
rs4838463	1.00[ASN][1000 genomes]
rs57844252	1.00[ASN][1000 genomes]
rs60022174	1.00[ASN][1000 genomes]
rs7085702	1.00[ASN][1000 genomes]
rs72785093	1.00[ASN][1000 genomes]
rs7898865	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:50336600-50341800	Weak transcription	Fetal Thymus	thymus
4	chr10:50338000-50340200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:50338600-50340400	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:50339400-50340200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr10:50339800-50340200	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
8	chr10:50339800-50342200	Weak transcription	Fetal Lung	lung
9	chr10:50340000-50340200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
10	chr10:50340000-50340200	Flanking Bivalent TSS/Enh	HSMM	muscle
11	chr10:50340000-50340200	Bivalent Enhancer	K562	blood
12	chr10:50340000-50340400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:50340000-50340400	Enhancers	Colonic Mucosa	Colon
14	chr10:50340000-50340600	Enhancers	HSMMtube	muscle
15	chr10:50340000-50341800	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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