Variant report

Variant	rs41280541
Chromosome Location	chr10:50359061-50359062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:50355645..50357503-chr10:50357925..50361172,3	K562	blood:
2	chr10:50358426..50360666-chr10:50372410..50375514,3	K562	blood:
3	chr10:50358294..50360224-chr10:50361427..50364405,2	K562	blood:
4	chr10:50358962..50361872-chr10:50363611..50365233,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDFY4-3	chr10:50358850-50359592	ENSG00000234736.1
2	lnc-WDFY4-3	chr10:50358850-50359195	ENSG00000234736.1
3	lnc-WDFY4-3	chr10:50358848-50359211	NONHSAT013294
4	lnc-WDFY4-3	chr10:50358850-50359590	NONHSAT013295
5	lnc-WDFY4-3	chr10:50358850-50359313	NONHSAT013296
6	lnc-WDFY4-3	chr10:50358850-50359313	NONHSAT013291

No data

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2377951	0.84[EUR][1000 genomes]
rs2377952	0.84[EUR][1000 genomes]
rs41306411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4433499	0.95[EUR][1000 genomes]
rs4838465	0.84[EUR][1000 genomes]
rs61743431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61748312	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7068519	1.00[EUR][1000 genomes]
rs7904486	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50354400-50362000	Weak transcription	K562	blood
2	chr10:50356400-50359200	Enhancers	Fetal Stomach	stomach
3	chr10:50357000-50359600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:50357200-50360000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:50357800-50359400	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:50358000-50359400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:50358000-50359800	Weak transcription	Fetal Lung	lung
8	chr10:50358000-50359800	Enhancers	NHDF-Ad	bronchial
9	chr10:50358400-50359600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:50358400-50361600	Weak transcription	HSMMtube	muscle
11	chr10:50358600-50359600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50358600-50361400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:50358800-50359200	Enhancers	Right Atrium	heart
14	chr10:50358800-50359400	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:50358800-50359400	Enhancers	Right Ventricle	heart
16	chr10:50358800-50359400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:50358800-50359400	Enhancers	Dnd41	blood
18	chr10:50358800-50359600	Enhancers	Fetal Thymus	thymus
19	chr10:50358800-50362000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:50359000-50359200	Enhancers	Adipose Nuclei	Adipose
21	chr10:50359000-50359200	Enhancers	HSMM	muscle
22	chr10:50359000-50359600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:50359000-50361200	Weak transcription	Psoas Muscle	Psoas
24	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart

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