Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50409247..50411284-chr10:50417033..50418956,2	K562	blood:
2	chr10:50415216..50419183-chr10:50424898..50429139,5	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10745252	1.00[ASN][1000 genomes]
rs10857443	1.00[ASN][1000 genomes]
rs10857445	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857447	0.87[EUR][1000 genomes]
rs11593489	1.00[ASN][1000 genomes]
rs17009596	0.87[EUR][1000 genomes]
rs17009606	0.87[EUR][1000 genomes]
rs2002392	1.00[ASN][1000 genomes]
rs2377950	1.00[ASN][1000 genomes]
rs2377951	1.00[ASN][1000 genomes]
rs2377952	1.00[ASN][1000 genomes]
rs2377985	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377987	1.00[ASN][1000 genomes]
rs2377991	1.00[ASN][1000 genomes]
rs2377992	1.00[ASN][1000 genomes]
rs2889807	1.00[ASN][1000 genomes]
rs4514329	1.00[ASN][1000 genomes]
rs4838372	1.00[ASN][1000 genomes]
rs4838465	1.00[ASN][1000 genomes]
rs58131680	0.87[EUR][1000 genomes]
rs6537509	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537510	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094605	1.00[ASN][1000 genomes]
rs7394346	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893648	1.00[ASN][1000 genomes]
rs7906560	1.00[ASN][1000 genomes]
rs7912808	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922135	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923767	1.00[ASN][1000 genomes]
rs9645532	1.00[ASN][1000 genomes]
rs9645533	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50413200-50421200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: