Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50433539..50435257-chr10:50436975..50439203,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10776546	0.87[EUR][1000 genomes]
rs10857445	1.00[EUR][1000 genomes]
rs10857447	1.00[EUR][1000 genomes]
rs12257188	0.86[EUR][1000 genomes]
rs17009530	0.86[EUR][1000 genomes]
rs17009562	0.86[EUR][1000 genomes]
rs17009596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009626	1.00[AMR][1000 genomes]
rs17451560	0.86[EUR][1000 genomes]
rs2377985	1.00[EUR][1000 genomes]
rs57374856	0.86[EUR][1000 genomes]
rs58131680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61404400	1.00[AMR][1000 genomes]
rs6537509	1.00[EUR][1000 genomes]
rs6537510	1.00[EUR][1000 genomes]
rs7075075	1.00[AMR][1000 genomes]
rs7075088	0.86[EUR][1000 genomes]
rs73300987	0.86[EUR][1000 genomes]
rs73305890	1.00[AMR][1000 genomes]
rs73306709	1.00[AMR][1000 genomes]
rs73306720	0.86[EUR][1000 genomes]
rs73306721	0.86[EUR][1000 genomes]
rs73306722	0.86[EUR][1000 genomes]
rs73306725	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73306731	1.00[AMR][1000 genomes]
rs73307805	1.00[AMR][1000 genomes]
rs73307810	1.00[AMR][1000 genomes]
rs73307874	1.00[AMR][1000 genomes]
rs73307884	1.00[AMR][1000 genomes]
rs73307885	1.00[AMR][1000 genomes]
rs7394346	1.00[EUR][1000 genomes]
rs7909019	0.86[EUR][1000 genomes]
rs7912808	1.00[EUR][1000 genomes]
rs7913102	0.86[EUR][1000 genomes]
rs7922135	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50436200-50439000	Weak transcription	Right Ventricle	heart

Quick Search: