Variant report

Variant	rs73307885
Chromosome Location	chr10:50526564-50526565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17009596	1.00[AMR][1000 genomes]
rs17009606	1.00[AMR][1000 genomes]
rs17009626	1.00[AMR][1000 genomes]
rs58131680	1.00[AMR][1000 genomes]
rs61404400	1.00[AMR][1000 genomes]
rs7075075	1.00[AMR][1000 genomes]
rs73305890	1.00[AMR][1000 genomes]
rs73306709	1.00[AMR][1000 genomes]
rs73306725	1.00[AMR][1000 genomes]
rs73306731	1.00[AMR][1000 genomes]
rs73307805	1.00[AMR][1000 genomes]
rs73307810	1.00[AMR][1000 genomes]
rs73307874	1.00[AMR][1000 genomes]
rs73307877	0.92[AFR][1000 genomes]
rs73307884	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50517200-50530600	Weak transcription	Pancreas	Pancrea
2	chr10:50522000-50526800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:50522000-50528200	Weak transcription	Right Atrium	heart
4	chr10:50523200-50528400	Weak transcription	Psoas Muscle	Psoas
5	chr10:50524600-50528600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:50525200-50526800	Strong transcription	Fetal Muscle Trunk	muscle
7	chr10:50525200-50529000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:50525800-50529000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:50526200-50526800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:50526200-50527000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:50526200-50527000	Strong transcription	Fetal Heart	heart
12	chr10:50526200-50527000	Enhancers	Spleen	Spleen
13	chr10:50526200-50527200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:50526200-50527400	Genic enhancers	Left Ventricle	heart
15	chr10:50526200-50527400	Strong transcription	Right Ventricle	heart
16	chr10:50526400-50527000	Enhancers	Primary B cells from cord blood	blood
17	chr10:50526400-50527000	Strong transcription	Fetal Muscle Leg	muscle
18	chr10:50526400-50527400	Strong transcription	K562	blood
19	chr10:50526400-50528400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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