Variant report

Variant	rs73306709
Chromosome Location	chr10:50388365-50388366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:50388059-50388592	K562	blood:	n/a	n/a
2	CUX1	chr10:50388296-50388634	K562	blood:	n/a	n/a
3	IRF1	chr10:50388295-50389089	K562	blood:	n/a	n/a
4	RELA	chr10:50388062-50388826	GM19099	blood:	n/a	n/a
5	CCNT2	chr10:50388270-50388463	K562	blood:	n/a	n/a
6	RCOR1	chr10:50388115-50388640	K562	blood:	n/a	n/a
7	NFIC	chr10:50388288-50388905	GM12878	blood:	n/a	n/a
8	ZNF384	chr10:50388340-50388868	K562	blood:	n/a	n/a
9	ZBTB7A	chr10:50387943-50388392	K562	blood:	n/a	n/a
10	ZNF143	chr10:50388243-50388477	GM12878	blood:	n/a	n/a
11	CTCF	chr10:50388296-50388496	GM12878	blood:	n/a	n/a
12	BCL11A	chr10:50388248-50388521	GM12878	blood:	n/a	n/a
13	MAZ	chr10:50387958-50388574	K562	blood:	n/a	n/a
14	JUND	chr10:50388345-50388892	K562	blood:	n/a	n/a
15	EP300	chr10:50388176-50388820	GM12878	blood:	n/a	n/a
16	EBF1	chr10:50387991-50388497	GM12878	blood:	n/a	chr10:50388113-50388124
17	SPI1	chr10:50388192-50388649	GM12878	blood:	n/a	n/a
18	EP300	chr10:50388245-50388874	GM12878	blood:	n/a	n/a
19	MYC	chr10:50388352-50388429	GM12878	blood:	n/a	n/a
20	MAX	chr10:50388217-50388448	GM12878	blood:	n/a	n/a
21	CHD2	chr10:50388051-50388467	GM12878	blood:	n/a	n/a
22	HMGN3	chr10:50388242-50388386	K562	blood:	n/a	n/a
23	IRF1	chr10:50388280-50388540	K562	blood:	n/a	n/a
24	TBL1XR1	chr10:50388313-50388956	GM12878	blood:	n/a	n/a
25	SPI1	chr10:50388189-50388631	GM12891	blood:	n/a	n/a
26	POLR2A	chr10:50388111-50388398	GM12878	blood:	n/a	n/a
27	ELF1	chr10:50388316-50388593	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50387072..50388785-chr10:50574135..50575972,2	K562	blood:
2	chr10:50388067..50390396-chr10:50495469..50498227,2	K562	blood:

No data

Variant related genes	Relation type
C10orf128	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17009596	1.00[AMR][1000 genomes]
rs17009606	1.00[AMR][1000 genomes]
rs17009626	1.00[AMR][1000 genomes]
rs58131680	1.00[AMR][1000 genomes]
rs7075075	1.00[AMR][1000 genomes]
rs73305890	1.00[AMR][1000 genomes]
rs73306725	1.00[AMR][1000 genomes]
rs73306731	1.00[AMR][1000 genomes]
rs73307805	1.00[AMR][1000 genomes]
rs73307810	1.00[AMR][1000 genomes]
rs73307874	1.00[AMR][1000 genomes]
rs73307884	1.00[AMR][1000 genomes]
rs73307885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50376800-50395200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:50378000-50388600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:50381800-50394800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:50382200-50390000	Enhancers	K562	blood
5	chr10:50383400-50395200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:50384200-50389600	Enhancers	Primary B cells from cord blood	blood
7	chr10:50384400-50396000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:50384800-50388600	Enhancers	Spleen	Spleen
9	chr10:50385400-50391800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:50385600-50390000	Weak transcription	Fetal Lung	lung
11	chr10:50385800-50389200	Enhancers	GM12878-XiMat	blood
12	chr10:50386000-50388400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:50386000-50390800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:50386000-50394800	Weak transcription	Brain Anterior Caudate	brain
15	chr10:50386000-50395200	Weak transcription	Psoas Muscle	Psoas
16	chr10:50386200-50389200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:50386200-50391600	Weak transcription	HUVEC	blood vessel
18	chr10:50386200-50392800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:50386200-50396000	Weak transcription	Placenta	Placenta
20	chr10:50386400-50392400	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:50386400-50395200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:50386600-50391000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:50386600-50391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:50386600-50391800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:50386600-50395200	Weak transcription	Lung	lung
26	chr10:50386600-50395200	Weak transcription	Right Ventricle	heart
27	chr10:50386800-50395200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:50387000-50394600	Weak transcription	Brain Substantia Nigra	brain
29	chr10:50387200-50388400	Weak transcription	Dnd41	blood
30	chr10:50387200-50391600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr10:50387400-50390000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:50387400-50391600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr10:50387600-50391600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:50387800-50388400	Enhancers	Colonic Mucosa	Colon
35	chr10:50387800-50388400	Enhancers	Duodenum Mucosa	Duodenum
36	chr10:50387800-50388600	Enhancers	Primary T cells fromperipheralblood	blood
37	chr10:50387800-50389400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:50388000-50388400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:50388000-50388400	Enhancers	Adipose Nuclei	Adipose
40	chr10:50388000-50388400	Enhancers	Right Atrium	heart
41	chr10:50388000-50388600	Enhancers	Fetal Thymus	thymus
42	chr10:50388200-50388600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:50388200-50388600	Enhancers	Left Ventricle	heart
44	chr10:50388200-50389600	Enhancers	Primary T helper cells PMA-I stimulated	--

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