Variant report

Variant	rs73306725
Chromosome Location	chr10:50398987-50398988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT1	chr10:50398926-50399104	GM12878	blood:	n/a	n/a
2	TBP	chr10:50398140-50399662	GM12878	blood:	n/a	n/a
3	EBF1	chr10:50398106-50399029	GM12878	blood:	n/a	chr10:50398305-50398316
4	POLR2A	chr10:50398117-50399107	GM19193	blood:	n/a	n/a
5	BHLHE40	chr10:50398259-50399135	GM12878	blood:	n/a	chr10:50398567-50398583
6	RELA	chr10:50397978-50399628	GM19099	blood:	n/a	n/a
7	MXI1	chr10:50398825-50399713	GM12878	blood:	n/a	n/a
8	ZNF143	chr10:50398960-50399117	GM12878	blood:	n/a	n/a
9	POLR2A	chr10:50398117-50399073	GM15510	blood:	n/a	n/a
10	WRNIP1	chr10:50398929-50399236	GM12878	blood:	n/a	n/a
11	ZNF384	chr10:50398304-50399841	GM12878	blood:	n/a	n/a
12	POLR2A	chr10:50397926-50399200	GM19099	blood:	n/a	n/a
13	IKZF1	chr10:50398072-50399058	GM12878	blood:	n/a	n/a
14	MYC	chr10:50398739-50399066	K562	blood:	n/a	n/a
15	EP300	chr10:50398830-50399252	K562	blood:	n/a	chr10:50398835-50398849
16	JUND	chr10:50398785-50399152	K562	blood:	n/a	n/a
17	RELA	chr10:50398196-50399165	GM15510	blood:	n/a	n/a
18	POLR2A	chr10:50398061-50399137	GM18951	blood:	n/a	n/a
19	RCOR1	chr10:50398689-50399205	K562	blood:	n/a	n/a
20	ZNF384	chr10:50398640-50399215	K562	blood:	n/a	n/a

Variant related genes	Relation type
C10orf128	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10857445	0.86[EUR][1000 genomes]
rs10857447	0.86[EUR][1000 genomes]
rs12253910	0.86[EUR][1000 genomes]
rs12257188	1.00[EUR][1000 genomes]
rs17009530	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17009562	1.00[EUR][1000 genomes]
rs17009596	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17009606	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17009626	1.00[AMR][1000 genomes]
rs17451560	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2377985	0.86[EUR][1000 genomes]
rs57374856	1.00[EUR][1000 genomes]
rs58131680	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61404400	1.00[AMR][1000 genomes]
rs6537509	0.86[EUR][1000 genomes]
rs6537510	0.86[EUR][1000 genomes]
rs7075075	1.00[AMR][1000 genomes]
rs7075088	1.00[EUR][1000 genomes]
rs73300987	1.00[EUR][1000 genomes]
rs73305890	1.00[AMR][1000 genomes]
rs73306709	1.00[AMR][1000 genomes]
rs73306720	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73306721	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73306722	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73306731	1.00[AMR][1000 genomes]
rs73307805	1.00[AMR][1000 genomes]
rs73307810	1.00[AMR][1000 genomes]
rs73307874	1.00[AMR][1000 genomes]
rs73307884	1.00[AMR][1000 genomes]
rs73307885	1.00[AMR][1000 genomes]
rs7394346	0.86[EUR][1000 genomes]
rs7909019	1.00[EUR][1000 genomes]
rs7912808	0.86[EUR][1000 genomes]
rs7913102	1.00[EUR][1000 genomes]
rs7922135	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50391600-50399400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:50394800-50399000	Enhancers	Primary hematopoietic stem cells	blood
3	chr10:50396400-50399200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:50396400-50399200	Enhancers	Placenta	Placenta
5	chr10:50396600-50399200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:50396600-50399200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:50396800-50399000	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:50396800-50399200	Enhancers	Left Ventricle	heart
9	chr10:50396800-50399200	Enhancers	K562	blood
10	chr10:50396800-50399400	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:50397000-50399600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:50397000-50401600	Weak transcription	HUVEC	blood vessel
13	chr10:50397600-50399400	Flanking Active TSS	GM12878-XiMat	blood
14	chr10:50398400-50399200	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr10:50398400-50399200	Active TSS	Colonic Mucosa	Colon
16	chr10:50398600-50399000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:50398600-50399000	Active TSS	Duodenum Mucosa	Duodenum
18	chr10:50398600-50399000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr10:50398600-50399200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:50398600-50399200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:50398600-50399200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:50398600-50399800	Enhancers	Primary B cells from cord blood	blood
23	chr10:50398600-50400000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:50398600-50402600	Weak transcription	Right Atrium	heart
25	chr10:50398600-50403400	Weak transcription	Spleen	Spleen
26	chr10:50398800-50399200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr10:50398800-50399200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr10:50398800-50399400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr10:50398800-50399400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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