Variant report
| Variant | rs7913102 |
|---|---|
| Chromosome Location | chr10:50405354-50405355 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:50404502..50406713-chr10:50505613..50507212,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236208 | Chromatin interaction |
| ENSG00000177354 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10857445 | 0.86[EUR][1000 genomes] |
| rs10857447 | 0.86[EUR][1000 genomes] |
| rs12253910 | 0.86[EUR][1000 genomes] |
| rs12257188 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17009530 | 1.00[EUR][1000 genomes] |
| rs17009562 | 1.00[EUR][1000 genomes] |
| rs17009596 | 0.86[EUR][1000 genomes] |
| rs17009606 | 0.86[EUR][1000 genomes] |
| rs17451560 | 1.00[EUR][1000 genomes] |
| rs2377985 | 0.86[EUR][1000 genomes] |
| rs57374856 | 1.00[EUR][1000 genomes] |
| rs58131680 | 0.86[EUR][1000 genomes] |
| rs6537509 | 0.86[EUR][1000 genomes] |
| rs6537510 | 0.86[EUR][1000 genomes] |
| rs7075088 | 1.00[EUR][1000 genomes] |
| rs73300987 | 1.00[EUR][1000 genomes] |
| rs73306720 | 1.00[EUR][1000 genomes] |
| rs73306721 | 1.00[EUR][1000 genomes] |
| rs73306722 | 1.00[EUR][1000 genomes] |
| rs73306725 | 1.00[EUR][1000 genomes] |
| rs7394346 | 0.86[EUR][1000 genomes] |
| rs7909019 | 1.00[EUR][1000 genomes] |
| rs7911808 | 1.00[TSI][hapmap] |
| rs7912808 | 0.86[EUR][1000 genomes] |
| rs7922135 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7913102 | UGT2B17 | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:50403600-50408600 | Weak transcription | HUVEC | blood vessel |
| 2 | chr10:50404600-50405800 | Enhancers | K562 | blood |
