Variant report

Variant	rs12257188
Chromosome Location	chr10:50398034-50398035
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:50397968-50398557	GM12878	blood:	n/a	n/a
2	RELA	chr10:50397978-50399628	GM19099	blood:	n/a	n/a
3	SPI1	chr10:50397994-50398613	HL-60	blood:	n/a	chr10:50398331-50398344
4	CEBPB	chr10:50398023-50398376	Hela-S3	cervix:	n/a	chr10:50398264-50398276
5	POLR2A	chr10:50397926-50399200	GM19099	blood:	n/a	n/a
6	FOS	chr10:50398013-50398537	MCF10A-Er-Src	breast:	n/a	n/a
7	IRF3	chr10:50397915-50398308	GM12878	blood:	n/a	chr10:50398177-50398184
8	ARID3A	chr10:50397996-50398225	K562	blood:	n/a	n/a
9	MTA3	chr10:50398010-50398942	GM12878	blood:	n/a	n/a
10	MYC	chr10:50397999-50398377	MCF10A-Er-Src	breast:	n/a	n/a
11	SPI1	chr10:50397997-50398488	GM12891	blood:	n/a	chr10:50398331-50398344

Variant related genes	Relation type
C10orf128	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10857445	0.86[EUR][1000 genomes]
rs10857447	0.86[EUR][1000 genomes]
rs12253910	0.86[EUR][1000 genomes]
rs17009530	1.00[EUR][1000 genomes]
rs17009562	1.00[EUR][1000 genomes]
rs17009596	0.86[EUR][1000 genomes]
rs17009606	0.86[EUR][1000 genomes]
rs17451560	1.00[EUR][1000 genomes]
rs2377985	0.86[EUR][1000 genomes]
rs57374856	1.00[EUR][1000 genomes]
rs58131680	0.86[EUR][1000 genomes]
rs6537509	0.86[EUR][1000 genomes]
rs6537510	0.86[EUR][1000 genomes]
rs7075088	1.00[EUR][1000 genomes]
rs73300987	1.00[EUR][1000 genomes]
rs73306720	1.00[EUR][1000 genomes]
rs73306721	1.00[EUR][1000 genomes]
rs73306722	1.00[EUR][1000 genomes]
rs73306725	1.00[EUR][1000 genomes]
rs7394346	0.86[EUR][1000 genomes]
rs7909019	1.00[EUR][1000 genomes]
rs7912808	0.86[EUR][1000 genomes]
rs7913102	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7922135	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50391600-50399400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:50394600-50398600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr10:50394800-50399000	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:50395200-50398600	Enhancers	Spleen	Spleen
5	chr10:50395400-50398400	Weak transcription	Esophagus	oesophagus
6	chr10:50396200-50398600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:50396400-50398800	Enhancers	Fetal Muscle Leg	muscle
8	chr10:50396400-50399200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:50396400-50399200	Enhancers	Placenta	Placenta
10	chr10:50396600-50398200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:50396600-50398200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr10:50396600-50398400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr10:50396600-50398600	Enhancers	Lung	lung
14	chr10:50396600-50399200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:50396600-50399200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:50396800-50398200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:50396800-50398400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:50396800-50398400	Enhancers	Adipose Nuclei	Adipose
19	chr10:50396800-50398600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:50396800-50398600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:50396800-50398800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr10:50396800-50399000	Enhancers	Fetal Muscle Trunk	muscle
23	chr10:50396800-50399200	Enhancers	Left Ventricle	heart
24	chr10:50396800-50399200	Enhancers	K562	blood
25	chr10:50396800-50399400	Enhancers	Primary B cells from peripheral blood	blood
26	chr10:50397000-50398200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:50397000-50398200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:50397000-50399600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:50397000-50401600	Weak transcription	HUVEC	blood vessel
30	chr10:50397400-50398200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr10:50397600-50398200	Enhancers	Colonic Mucosa	Colon
32	chr10:50397600-50398600	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr10:50397600-50398600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:50397600-50399400	Flanking Active TSS	GM12878-XiMat	blood
35	chr10:50397800-50398800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr10:50398000-50398200	Weak transcription	Right Atrium	heart
37	chr10:50398000-50398200	Weak transcription	Right Ventricle	heart
38	chr10:50398000-50398400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
39	chr10:50398000-50398400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr10:50398000-50398600	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr10:50398000-50398600	Flanking Active TSS	Hela-S3	cervix

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