Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10776546	0.87[EUR][1000 genomes]
rs10857445	0.80[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257188	0.86[EUR][1000 genomes]
rs17009530	0.86[EUR][1000 genomes]
rs17009562	0.86[EUR][1000 genomes]
rs17009596	1.00[EUR][1000 genomes]
rs17009606	1.00[EUR][1000 genomes]
rs17451560	0.86[EUR][1000 genomes]
rs2002392	0.91[AFR][1000 genomes]
rs2377985	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2889807	0.87[AFR][1000 genomes]
rs57374856	0.86[EUR][1000 genomes]
rs58131680	1.00[EUR][1000 genomes]
rs6537509	1.00[EUR][1000 genomes]
rs6537510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7075088	0.86[EUR][1000 genomes]
rs73300987	0.86[EUR][1000 genomes]
rs73306720	0.86[EUR][1000 genomes]
rs73306721	0.86[EUR][1000 genomes]
rs73306722	0.86[EUR][1000 genomes]
rs73306725	0.86[EUR][1000 genomes]
rs7394346	1.00[EUR][1000 genomes]
rs7909019	0.86[EUR][1000 genomes]
rs7911808	1.00[MEX][hapmap]
rs7912808	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7913102	0.86[EUR][1000 genomes]
rs7922135	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50427800-50432000	Weak transcription	K562	blood
2	chr10:50429400-50433200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:50429600-50433400	Weak transcription	Right Atrium	heart
4	chr10:50429600-50433400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:50429800-50433600	Weak transcription	Right Ventricle	heart
6	chr10:50430000-50433400	Weak transcription	Left Ventricle	heart
7	chr10:50431000-50431600	Enhancers	Fetal Thymus	thymus
8	chr10:50431400-50431600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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